Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0531 ATGGCGGCTCCTATTCTTCTTCGTTCTCTCTTCTCCTCTTCTCGTAAATTCTCTCCCACTTCTCCTCTCACTCCATCTCGCTTCTTCTCTAAACTCAACCACTTCACTCGCGCTTTCTCCTCCGCCTCTTCCGCCGCCACCGCTCCCACTTCTTCCGCCGCATCCCTCGACCCCAGCCACCTCCGCAACGTGGCGGTTATCGCTCATGTCGACCACGGCAAGACTACTCTCATGGATCGGCTGCTCCGTCAGTGCGGCGCCGATATCCCCCACGAACGAGCTATGGATTCAATCTCCCTCGAACGCGAGCGTGGAATCACTATTTCTTCAAAGGTTACATCCATTACTTGGAAAGAAAATGAACTCAACATGGTTGATACTCCTGGACATGCTGATTTTGGCGGTGAAGTTGAACGTGTTGTTGGTATGGTTGAGGGAGCAATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCGCAAACAAAATTTGTCCTTGCAAAAGCCTTAAAGTATGGATTGCGGCCTATTCTTCTCATGAACAAAGTAGATCGACCTTCAGTTACTGTGGAGACATGTAATGAAGTTGAGAGTTTGGTGTTTGATCTGTTTGCCAACCTGGGTGCTACAGAGGAACAACTAGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCGGCTGAGGCCAAAAATATGTCACAGTTACTTGATGCCATTGTTTCACATGTCCTACCACCAAACGCAAGCATCGATGCTCCTTTCCAAATGCTGGTTTCAATGATGGAACGAGACTTCTATCTTGGGCGGATTTTGACTGGACGTGTATATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCATGGACTACGTAATAATGATTCTGTTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAAGTCATGAAAAAGAAGGGAACAGTCATGATCCCAGTTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGCTTGGCAACACCATCAATAGGCCATACAGTATCCACTGTGGAGGTCATGTCTGTATTGCCCACAGTTGTATTGGATCCTCCAACAATCTCAATGACTTTTGGTGTAAATGACTCTCCATTGGCTGGTCGTGATGGTACTCATTTGACTGGAGGAAGAATTGGTGACCGACTGATGGCTGAAGCTGAAACAAACCTTGCCATAAATGTACTTCCAGGCATATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAACTGGGTATCCTAATTGAGAATATGAGACGCGAGGGATTTGAGTTATCGGTCTCGCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAGAAACTTGAGCCAGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGGTTGGTCATGGAGGCCTTGTCTCATAGACGAGCTGAGGTTACTGATATGGGTCCTGTCTCAGGAACTGTTGGTCGGACCAGACTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGAAGTGTGTTCAGCACTGACACACGTGGAACTGGATTTATGCATTGTGCTTTCTCTGCATATGAAAAGTATCGAGGCCCTCTTGGCAATGTTAGGAAAGGAGTGCTGGTTTCAATGGGTTATGGTACTATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGTGGGACTCTTTTCGTATCACCTGGAATGGAGACATACGATGGAATGATTGTAGGAGAACACTCAAAGGATACAGATCTTGATATCAATCCTGTGAGAGCTAAAGCACTTACAAATGTGCGTGCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCCCCTCGCCTTATAACACTTGAAGAAGCTATCGGGTATGTAGCTTCGGATGAGCTTATTGAAGTTACACCGAAGTCCATTCGGTTGCGGAAGAAATACCTTGATGTTAACAAACGTAAGACCATGAGTAGAAGACCAAGGGAATGA 2010 0.4602 MAAPILLRSLFSSSRKFSPTSPLTPSRFFSKLNHFTRAFSSASSAATAPTSSAASLDPSHLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSITWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLMNKVDRPSVTVETCNEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEAKNMSQLLDAIVSHVLPPNASIDAPFQMLVSMMERDFYLGRILTGRVYSGVVRVGDRVHGLRNNDSVAEKIEDGKVVKVMKKKGTVMIPVDCAGAGDIISIAGLATPSIGHTVSTVEVMSVLPTVVLDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGISESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSTDTRGTGFMHCAFSAYEKYRGPLGNVRKGVLVSMGYGTITAHALMSLEARGTLFVSPGMETYDGMIVGEHSKDTDLDINPVRAKALTNVRAASKDENVKLTPPRLITLEEAIGYVASDELIEVTPKSIRLRKKYLDVNKRKTMSRRPRE* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0531 669 CDD TypA_BipA 61 256 - -
Lan13g0531 669 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 668 - -
Lan13g0531 669 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 61 661 IPR006298 GO:0005525
Lan13g0531 669 SUPERFAMILY EF-G C-terminal domain-like 460 576 IPR035647 -
Lan13g0531 669 Gene3D bipa protein 546 661 IPR042116 -
Lan13g0531 669 Pfam Elongation factor G C-terminus 458 541 IPR000640 -
Lan13g0531 669 Pfam Elongation factor Tu GTP binding domain 61 253 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 PRINTS GTP-binding elongation factor signature 63 76 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 PRINTS GTP-binding elongation factor signature 103 111 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 PRINTS GTP-binding elongation factor signature 175 184 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 CDD BipA_TypA_C 460 540 IPR035651 -
Lan13g0531 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 266 IPR027417 -
Lan13g0531 669 Gene3D - 451 545 - -
Lan13g0531 669 Pfam Elongation factor Tu domain 2 278 351 IPR004161 GO:0005525
Lan13g0531 669 SUPERFAMILY Translation proteins 206 361 IPR009000 -
Lan13g0531 669 PANTHER ELONGATION FACTOR FAMILY PROTEIN 6 668 - -
Lan13g0531 669 CDD BipA_III 368 445 - -
Lan13g0531 669 Gene3D - 59 257 IPR027417 -
Lan13g0531 669 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 96 111 IPR031157 -
Lan13g0531 669 Gene3D Elongation Factor G (Translational Gtpase), domain 3 369 653 - -
Lan13g0531 669 SUPERFAMILY EF-G C-terminal domain-like 366 449 IPR035647 -
Lan13g0531 669 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 59 257 IPR000795 GO:0003924|GO:0005525
Lan13g0531 669 TIGRFAM small_GTP: small GTP-binding protein domain 62 193 IPR005225 GO:0005525
Lan13g0531 669 Gene3D Translation factors 259 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0531 Lan-Chr13 4027430 4038252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0531 61 184 Eukaryotic Initiation Factors Gene Family AT3G22980 42.308 5.25e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0531 K06207 - gmx:100782425 1135.94