Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0520 ATGAGTGATATTCGAAAGTGGTTCATGAAATCTCATGCTAATGTCAATGACAGTGTTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCTCAGAAAACGGTGCCTGGAGGCCAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAATATTTTGATAAAGACAAAGAAAAGGTGAAAGAAGAGAAAGAAACACCGAAGCTCCCTGCTAAAAGAAAGAATATGAAGGACATCGAGGAATTACAGATACCCCGCCCTTCAAAGAAACTTCATGAAGCGGATGAAGACGAGTCTGCCTTGCCCACATCTTATAAGAAGTTAGCTGATTCCACTCCGACAAAAAAATTAAAGAGTGGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGATTTGGAAGAAAATGATGAAGATGATGACAAAGATAAGGTTACTCCAGCTAAATCTGGTGGTAGGGGTCGGGGTGGACGAGGGGCATCGACACCATCAACTGGTGGTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGCGAAAGAAAAGATCCTCCGCATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTACCTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCTGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACTGGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAAGCCAAAGAGCTTGGGACTTCCTTCCTCACAGAGGATGGATTGTTTGGTATGATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGAAGAACCCAAGAAACCTCTGACTAAGGCTGTTGCATTAGCATCCCAGTCAAAAGGTCCTCCAAAAGTAGAAGCAAAGATCTCTTTATCTTCATCCTCACCTTCTACCCAAGCCAAGCCAAAGGCAGCAACTATCACTCAATCTTCTTCGATGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGCTTGGAATGAGCAATTCCTCGACACTGGTAGTAATAAAAAAGGAGGTAAAAAGCAAACCGGATCTGCTTCCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCGTAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGGCCCTTGGTGCTAATATGGATCGGTCAAAGCTTTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAACGACCGTTACAGCCAGAAACTAAAAAGTCTCGTGAACTACTGTTTGCTTCTTAGTTATCGAAAGCCTACAAAGCAACAGATGGCGAAGAGGCTGATGGATGTTGCAAAGGCAGAGGGGCTTCAAGTTAATGAGATTGCTCTCGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCAATAAATCAGTTACAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTCTTAAAAATTCGAAGGATGAAGAGATTTCGCCATTTACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTCTCTCAAACTAGTTCTGTCGTATCATGTATAATTCCTGCTTCATTACTGCATGGGCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAAGGGGTAAAAACATGAGACTTTTGGATGATCTTCATGGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGGATACTATACGCTTGGAATACCTTACTCTGCTTCTTCAACAACTGACAGAACCACTGAAAACCCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTCATGAATACATACTCTATCACTCAGGAAGATTTTGATACTATTGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCTTCTAGAGGGCATACCGCCCGCCGTCAAGTCAGCCTTGACAAAAGCATATAAGGAGCAAAGCAAATATCGGATGGTGCGAGCTGCAGATCAAGTCACTCTTCGGATGGTGCGAGGTTCAGATCGAGTCACTCTTCCTGAAATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTAGAACCAGCTGATGAAGGAGTGGAACAAGGTGATGGTGAAACCTTGGACGAGAGTGAAGATGAGAACACCTCCGACACTGAGGAGTTGGGCACTACTGCTGGGGAGAAGCTACAGTCGGAACTTCAAAGCTTGAATTCAAAAGCTGTTCAAGTACAATTGGAGTTGAAGGGAACAGGCAATTCAAGTTCGAAGAAGCCATCTGCTGGTAAAGGAAAAGGTGCTTCTGCATCTGCACAGAAGGCTGGCCAAACATCAAAAAGAAAAAGGTGA 2871 0.4347 MSDIRKWFMKSHANVNDSVSKPSSDDKVQPQKTVPGGQESSGSGRRKTSKYFDKDKEKVKEEKETPKLPAKRKNMKDIEELQIPRPSKKLHEADEDESALPTSYKKLADSTPTKKLKSGSGRGTPQKSADLEENDEDDDKDKVTPAKSGGRGRGGRGASTPSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPTCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSEKAKELGTSFLTEDGLFGMIRASKPVKAPLKEEPKKPLTKAVALASQSKGPPKVEAKISLSSSSPSTQAKPKAATITQSSSMWTDKHRPKSPKDIIGNQSLVSQLRNWLKAWNEQFLDTGSNKKGGKKQTGSASQKAVLLSGTPGIGKTTSAKLVCQELGFQAVEVNASDSRGKADSKIGKGISGSTKNSVKELVTNEALGANMDRSKLSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMAINQLQYMSLSMSVINFDDIRQRFLKNSKDEEISPFTAVDKLFGFNAGKLKMDERNNLSMSDPDLVPLLIQENYINYRPSGAGKDDSGITRMNLIARAAESIADGDIVNVQIRRYQQWQLSQTSSVVSCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTRGKNMRLLDDLHGHILASRETSPGRDTIRLEYLTLLLQQLTEPLKTLPKAEAVEKVVEFMNTYSITQEDFDTIVELSKFKGHPNLLEGIPPAVKSALTKAYKEQSKYRMVRAADQVTLRMVRGSDRVTLPEIKKAPKKRIAAILEPADEGVEQGDGETLDESEDENTSDTEELGTTAGEKLQSELQSLNSKAVQVQLELKGTGNSSSKKPSAGKGKGASASAQKAGQTSKRKR* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0520 956 Pfam Replication factor RFC1 C terminal domain 663 825 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lan13g0520 956 MobiDBLite consensus disorder prediction 919 956 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 309 337 - -
Lan13g0520 956 SMART BRCT_7 197 275 IPR001357 -
Lan13g0520 956 MobiDBLite consensus disorder prediction 866 903 - -
Lan13g0520 956 Pfam ATPase family associated with various cellular activities (AAA) 390 489 IPR003959 GO:0005524|GO:0016887
Lan13g0520 956 SMART AAA_5 386 524 IPR003593 -
Lan13g0520 956 Gene3D - 595 704 - -
Lan13g0520 956 Gene3D BRCT domain 172 274 IPR036420 -
Lan13g0520 956 PANTHER REPLICATION FACTOR C SUBUNIT 1 20 932 - -
Lan13g0520 956 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 20 932 - -
Lan13g0520 956 Pfam BRCA1 C Terminus (BRCT) domain 197 270 IPR001357 -
Lan13g0520 956 MobiDBLite consensus disorder prediction 46 102 - -
Lan13g0520 956 PIRSF RFC1 1 936 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lan13g0520 956 SUPERFAMILY post-AAA+ oligomerization domain-like 594 739 IPR008921 GO:0003677|GO:0006260
Lan13g0520 956 MobiDBLite consensus disorder prediction 104 127 - -
Lan13g0520 956 ProSiteProfiles BRCT domain profile. 195 278 IPR001357 -
Lan13g0520 956 Coils Coil 901 921 - -
Lan13g0520 956 SUPERFAMILY BRCT domain 195 277 IPR036420 -
Lan13g0520 956 CDD BRCT_RFC1 195 273 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 282 347 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 13 45 - -
Lan13g0520 956 CDD AAA 384 486 - -
Lan13g0520 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 583 IPR027417 -
Lan13g0520 956 CDD HLD_clamp_RFC 523 581 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 13 196 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 873 893 - -
Lan13g0520 956 Gene3D - 332 522 IPR027417 -
Lan13g0520 956 MobiDBLite consensus disorder prediction 179 193 - -
Lan13g0520 956 MobiDBLite consensus disorder prediction 919 935 - -
Lan13g0520 956 Gene3D - 523 593 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0520 1 914 Core DNA Replication Machinery Family AT5G22010 66.667 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0520 K10754 - gmx:100790070 1338.94