Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0518 ATGTTTAACGGTATGATGGATCCTGAGATGCTCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTAGCACGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCAGAAAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAACAGTTAAAGCATACACGTCCTGAAGAAATGGCTCAGATTGGTGAGAAGATGGCTAATGCAACACCTGATGAAGTAGCAGCTATGCGTGCTCGTGCTGATGCCCAGATCAAATATCAATTAGATGCAGCTGAAATATTGAAGAAACAGGGAAATGAACTTCATAGTCAGGGAAAGTTCAATAATGCTCTGCAGAAATATCTGATTGCTAAGGAAAACATTAAAGAGATTCCACCTTTTCAAAGTAGAAAGCTTCTTTTGGCCTGCTCACTCAACTTGATGTCATGTTACTTGAAGACAAGGCAGTATGAGGAATGTGTAAAAGAAGGTTCCGAGGTTTTGGTGTATGATGCCAAGAATCTTAAGGCTCTTTATCGAAGAGGTCAGGCGTACAAGGAACTAGGCCTACTAAATGATGCTGTTACTGATTTGAGCATGGCACTTGAAGTGGCCCCTGATGATGATACAATTGCAGAGCTTTTACAGGACACCAAGGAAATGTTGACAAATGGAGGTGGTGAACATGCACCCAGAGGTTTAGTAATTGAAGAAATAACCGAAGAAGTCGAGAGTGTGCCTTCTGAAAGCAACAAAAACTCTTCTCTGAAACCAACAGTGGTTCAGCCAAAAAAATCTGGTGACTCTTCTAAGAGCAACAGCACAGTTAACAATGGATATCCAAAAGCATATGCAGAGAGTTTAGATACATTGAAAAATGATCCAGAAGCTATCAGATCATTTCAAAACTTCATCTCAAATGCTGATCCTGCCACTCTGGCTTCTTTGAATACTGAACAATCCAAAGATCTACCTCCAGAAATGATTAGAACTGCTTCAAATATGATTGGCAAGATGTCACCTGAGGAACTCCAAAAAATGCTTGACATGGCTGCTTCATTTCAAGGAGACAACCCTTTTGCCAGAGGTTCCCCTGATTCTCCGTTCAACCCTGGATCAATCCCTCCCAATGTGTCACCTGATATGTTTAAAACAGCGAGTGATATGATAAGTAAAATGCCACCAGATGAGCTTCAGAAGATGTTTGAAATGGCATCCTCATTGAAAGGGAGAGAATCTCCATCATTATCTGCTGTAGCCAAGGAGGAAAGAAATGTTTCCCAGTCAAACTTCCCATCCTCAAGTACTAGTGGAACTAATGCTTTCAGAGAATCAAGTTCTTTTCTCGATGCTTTTTCAAATATGAGAAATGCTTCTCAGCCAAACTTCCCTTCCTCGAGCACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCTGCTATGCGGCAGATGTTCACATCAATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAGTTTGGTGTCAAGCTTTCAAAAGAAGATGCAGCAAAAGCTCAGCAAGCCATGTCATCCTTTTCACCTGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGGTTCAAAGAGTAGTTGAAGGTGTTAAAAAGACAAAGAACTGGTTGCTAGGGAAACCTGGCATGGCCTTAGCAATATTCATGCTCATTTTGGCTGTCCTTCTTCACCGCTTGGGCTACATTGGTGGCTAG 1761 0.4185 MFNGMMDPEMLRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAQIGEKMANATPDEVAAMRARADAQIKYQLDAAEILKKQGNELHSQGKFNNALQKYLIAKENIKEIPPFQSRKLLLACSLNLMSCYLKTRQYEECVKEGSEVLVYDAKNLKALYRRGQAYKELGLLNDAVTDLSMALEVAPDDDTIAELLQDTKEMLTNGGGEHAPRGLVIEEITEEVESVPSESNKNSSLKPTVVQPKKSGDSSKSNSTVNNGYPKAYAESLDTLKNDPEAIRSFQNFISNADPATLASLNTEQSKDLPPEMIRTASNMIGKMSPEELQKMLDMAASFQGDNPFARGSPDSPFNPGSIPPNVSPDMFKTASDMISKMPPDELQKMFEMASSLKGRESPSLSAVAKEERNVSQSNFPSSSTSGTNAFRESSSFLDAFSNMRNASQPNFPSSSTDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSKEDAAKAQQAMSSFSPESLDKMMLWADRVQRVVEGVKKTKNWLLGKPGMALAIFMLILAVLLHRLGYIGG* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0518 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Lan13g0518 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Lan13g0518 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Lan13g0518 586 MobiDBLite consensus disorder prediction 425 445 - -
Lan13g0518 586 MobiDBLite consensus disorder prediction 418 445 - -
Lan13g0518 586 PANTHER OUTER ENVELOPE PROTEIN 61 58 585 - -
Lan13g0518 586 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
Lan13g0518 586 MobiDBLite consensus disorder prediction 247 286 - -
Lan13g0518 586 SUPERFAMILY TPR-like 95 226 IPR011990 GO:0005515
Lan13g0518 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Lan13g0518 586 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 58 585 - -
Lan13g0518 586 MobiDBLite consensus disorder prediction 251 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0518 Lan-Chr13 3900403 3906255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0518 93 216 Calmodulin-binding Proteins AT5G48570 34.615 7.40e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0518 - - gmx:100800315 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0411 7 2890288 2895701 Lan13g0518 13 3900403 3906255 LSH
Lan8g1561 8 22646468 22650577 Lan13g0518 13 3900403 3906255 LSH