Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0516 ATGGCCAGAGGGAGTGGACTCTCCATGGATTCAGATCCAGTTGGGACCTTCTTTCTCCACAAGCCACCAACTGTTCTCAACTCTTTCCCTTCTTCTGAAGAAGAACACAACACAAAGTGGACACTTAGTCCTAATAACAATAACATGGAGGCCACACTTAGGACCTCTTCACCTACACATAACACCACCACAATCCCTTTCCAAGTCAACAACCATGCCTCTTCATCTCATCATGACATGATCATAACAACAGAAATGGACTTCTTCTCTGACAAAAACAACAACAACAACAACAACAACGTTGCCTCTTCTTCTGTCCCTGACAATGATCATATACATGATCATGCTATACCTTCTATATTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACTAGCAGTGATCAATCTATGGTGGAGGATGAGATATCACCTAATTCAGAAGACAAAAGAAGTAAGAATGAGGCAGTTCTAGAAGCTGAGCTAGAGCGAATGAAGGTTGAGAATCAACGGTTAAAGGAGACTTTTGATGAGGTTAATACCAATTACAAAGCCTTGCAGATGCATGTGGTGAGTTTGATGCGGGACCAGAAGGGAGAGGATGGAGAAGAAAGAGAAGTTTTTGATGGGAAAGTAGAAGAGAATAAGAAAAGGAAGCAAATTGAGACCAATGGGGTATTAGTGCCAAGGCAGTTTATGGATCTGGGTTTGGCTACAAATATTTCTGAGACTAAGATTGAAGATCCCTCTTCTTCATCAAGGGGAAGAAGTCAAGATAGATCAGGTTCACCAGGAAATAATAACTTAGAGGTAGCTTCAAAGGAGTTAGGCACTAGTAAGAATGTGAATGGGAGTGGGAGTGGTAGTGATGAAGGACTTGTGTTTGATCAAGAGAAGAAGGATTTTGGTAATGGTAGTAGGGGAATTGAAAGTCCTCCTAAAAATGTTGATCAAGCTGAGGCTACTATGAGGAAGGCTAGAGTTTCTGTTAGAGCTAGATCAGAAGCACCAATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCTAAAGGAAACCCGTGTCCTCGAGCTTATTATCGGTGCACCATGGCTTCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAGCAGTCCTTATCACAACATATGAAGGCAATCACAACCACCCTTTACCTCCAGCAGCAATGGCAATGGCACAAACCACTTCTTCAGCTGCAAGAATGTTGCTTTCAGGATCAATGTCAAGTGCTGACAGCATAATGAATGCAAACTTCCTCAGTAGGACACTGCTTCCTTGCTCTTCAAGCATGGCATCTATCTCAGCATCTGCTCCATTTCCAACTGTTACATTGGACTTAACTCAATCTCCAAACCCTTTTCAATTCCCAAGGCCTCCAATCCAGTTCCAAATACCTTTCCCTCAGAATTTTGCCAACTCCTCAGCCTCATTAATGCCTCAGATGTTGGGTCAGGCACTTTATAACCAATCAAAGTTTTCTGGTCTTCAAATGTCTTCAAATGGAGTAGTAGATCCTTCTCAATTAGGTGGTAATCAAGCTACTCCATCACACCTTGCTGATACAGTTAGTGCTGCCACTGCAGCCATTGCAACTGATCCTAACTTCACTGCTGCTTTGGCAGCTGCTATCACTTCCATTATTGGTGGTGGTGCTCAGGCAAACAACAATAGCACAAACAATAATGGCAGCAACAACAATGGAAATATCACAACTAGCAACAACAATAGCAACAATGGAAAGCAATAA 1803 0.426 MARGSGLSMDSDPVGTFFLHKPPTVLNSFPSSEEEHNTKWTLSPNNNNMEATLRTSSPTHNTTTIPFQVNNHASSSHHDMIITTEMDFFSDKNNNNNNNNVASSSVPDNDHIHDHAIPSILEFKVNTGLNLLTTNTSSDQSMVEDEISPNSEDKRSKNEAVLEAELERMKVENQRLKETFDEVNTNYKALQMHVVSLMRDQKGEDGEEREVFDGKVEENKKRKQIETNGVLVPRQFMDLGLATNISETKIEDPSSSSRGRSQDRSGSPGNNNLEVASKELGTSKNVNGSGSGSDEGLVFDQEKKDFGNGSRGIESPPKNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDRAVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSIMNANFLSRTLLPCSSSMASISASAPFPTVTLDLTQSPNPFQFPRPPIQFQIPFPQNFANSSASLMPQMLGQALYNQSKFSGLQMSSNGVVDPSQLGGNQATPSHLADTVSAATAAIATDPNFTAALAAAITSIIGGGAQANNNSTNNNGSNNNGNITTSNNNSNNGKQ* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0516 600 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 596 IPR044810 GO:0003700
Lan13g0516 600 MobiDBLite consensus disorder prediction 576 600 - -
Lan13g0516 600 MobiDBLite consensus disorder prediction 136 157 - -
Lan13g0516 600 PANTHER OS05G0567200 PROTEIN 61 596 - -
Lan13g0516 600 ProSiteProfiles WRKY domain profile. 338 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan13g0516 600 Coils Coil 154 193 - -
Lan13g0516 600 SUPERFAMILY WRKY DNA-binding domain 336 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan13g0516 600 Pfam WRKY DNA -binding domain 345 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan13g0516 600 Gene3D WRKY domain 328 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan13g0516 600 MobiDBLite consensus disorder prediction 244 324 - -
Lan13g0516 600 SMART WRKY_cls 343 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan13g0516 600 MobiDBLite consensus disorder prediction 28 48 - -
Lan13g0516 600 MobiDBLite consensus disorder prediction 259 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0516 Lan-Chr13 3889206 3892347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0516 79 587 WRKY Transcription Factor Family AT1G62300 50.190 4.66e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan13g0516 WRKY 3.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0516 - - gmx:100797998 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0416 7 2925653 2928414 Lan13g0516 13 3889206 3892347 LSH
Lan6g1873 6 29823675 29826866 Lan13g0516 13 3889206 3892347 PCT
Lan10g0026 10 132199 134779 Lan13g0516 13 3889206 3892347 PCT
Lan13g0516 13 3889206 3892347 Lan6g1873 6 29823675 29826866 PCT
Lan13g0516 13 3889206 3892347 Lan10g0026 10 132199 134779 PCT