Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan13g0511 | ATGGAACTTCGTTCTCATCGACGACGCCTTTCCGAATCATCACTCTCCGGAACAGGGAAGGAGAAGCAACCAAGAGATGGCATTGGGGAAGATGAAACTAATAGCAAGTGCAGCAATGACACCAATGAACATGTTCATGACATTTCTTCAGATTCTGATTTCAATTGTGAAGATGAAGAGTTCGGTGTGAACTTCATTCCTGACTTGAATGAAGAACCAATTTCAAGCATCAGTGTTTCTGATGGAGAAGATATTCTCTCTGACTCATATGATGCTATAGAGCCTTTATTGAATAGTGGAAAGTCGCAGTCCAGAAGGAAAAGAAAAAAATCCGGCTTCGGAGAACCAAGTGATGGTGATAGAGTGGTGGAGAATGGGGATGATGAGGAACATTTGATGGTTTTTCAGCAATCAGCCCCTATTAATTTGACCAAGACAAAAAAGAAGAAAAAAGGGAAAAGGACAAGAAAGGAAGATTCAAAGCCAGTGTTATTGTGGCATGCTTGGGAAGAGCAGCAAGAGAAATGGGTCGATGAGAATTTATTGGAAGATTTTGACATAGATCACCAGAGTGAAGTAATGAATGAAACTGTCGAGCCATCCTCAGATCTGATTATGCCTTTGCTAAGGTATCAAAAGGAATGGTTAGCATGGGCTTTGAAACAGGAAAGTTCTGTGACTAAAGGAGGAATCCTTGCTGACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCACCAGATGAGTTGTGAAGCAGATGAACCATCATCTTCACCAGGTTCATCTACAGTCTTGCCTGCCATCAAAGGCACACTTGTCATCTGTCCTGTGGTTGCTGTCACTCAATGGGTTAGTGAGATTGATCGGTTTACTTTGAAAGGAAGCACCAAGGTGTTGGTTTATCACGGGGCAAAGAGAGAGAAGAGTGGTGAACAGTTCTCAGAGTATGACTTTGTAATAACAACATACTCTATTGTGGAGTCTGAATACAGAAAGCATATGATGCCTCCTAAGGAGGAGTGCCAATATTGTGGAAAATTATTTAACCCAAGGAGTTTAACTTCTCATCAGAGGTATTTTTGTGGGCCTGGTGCTACTAGAACAGATAAACAAGCAAAGCAAATAAAGAAAAAGAAAAGAGATCTTACTAAGAAGAAGCTCAAAGAATTGAAGTCTTGGGACGAAGAATTGGAAAAGGGTTTTATGAAGAAAAAGAATTTGGAATTGCGGTCGAGGACAAAAGATTCAGATACCAAAGACAGGGACAAGTCATTTCTACATGCTGTGAAGTGGCAGCGTATCATACTGGATGAGGCACACTATATAAAATCTAGACATTCTAACACTGCAAAAGCAGTTCTGGCTTTAGAGTCCTCCTACAGATGGGCATTAAGTGGCACTCCCCTTCAGAACCGGGTTGGAGAGCTGTATTCTTTGGTGCGATTTCTGCAAATAATTCCTTATTCATATTACTTATGCAAGGACTGTGATTGCAAGATACTTGATCATAGCTCCTCTAGACAATGTTCAAACTGCAACCACAGTACTGTTAGACATTTCTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCATATGGGTATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAGTTTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCCGACCTTGCACTTCCGCCTAGAATTGTTTCATTAAGGAAGGATAGCCTGGACATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGTCACAGTTTAATACATATGTTGAAGCAAATACTCTCATGAATAATTATGCTCATATATTTGACCTCCTTACACGATTGCGTCAGGCTGTTGATCACCCATATCTTGTGGTATATTCTCCAACTGCAGCATTAAGAGGTGGGAATTTAGCTGGTAATGGTACTGTTGAACAAGAATGTGGCCTTTGTCATGATCAAGTAGAAGATCCTGTGGTTACTTCTTGTGAGCATGTTTTTTGCAAGTCATGCTTGATAGACTTTTCTACTTCCTTGGGACGAGTATCATGCCCCTCATGCTCTAAATTGCTTACTGTTGATTTAACTTCCAACATGGTTGCTGGGGTTCATGCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAACAGAATTCAGCTCGAAAATTTTCAGACAAGCACTAAAATAGAGGCATTGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTACACATCATTCTTGGATCTCATAAACTACGCCCTGAACAAGTCAGGCGTATCTTGTGTTCAATTGAATGGACAAATGTCATTGCCTGCTCGGGATGCTGCCATTAAGAGGTTTATTGATAACCCCGAATGCAGAATTTTTCTCATGAGCTTGAAAGCAGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACCGAATTCACCGAATAGGGCAATACAAACCAATCAGAATTGTAAGGTTTGTCATTGAAAACACAATAGAGGAGAGGATTTTGAAGTTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATTGGTGGTTCTTCTGAGGCTCTGGGGAAATTGACCGAGGCTGACTTGAAATTTCTCTTTGTTACCTAA | 2763 | 0.4068 | MELRSHRRRLSESSLSGTGKEKQPRDGIGEDETNSKCSNDTNEHVHDISSDSDFNCEDEEFGVNFIPDLNEEPISSISVSDGEDILSDSYDAIEPLLNSGKSQSRRKRKKSGFGEPSDGDRVVENGDDEEHLMVFQQSAPINLTKTKKKKKGKRTRKEDSKPVLLWHAWEEQQEKWVDENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKHMMPPKEECQYCGKLFNPRSLTSHQRYFCGPGATRTDKQAKQIKKKKRDLTKKKLKELKSWDEELEKGFMKKKNLELRSRTKDSDTKDRDKSFLHAVKWQRIILDEAHYIKSRHSNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIIPYSYYLCKDCDCKILDHSSSRQCSNCNHSTVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQSQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALRGGNLAGNGTVEQECGLCHDQVEDPVVTSCEHVFCKSCLIDFSTSLGRVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* | 921 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan13g0511 | 920 | MobiDBLite | consensus disorder prediction | 96 | 124 | - | - | |
Lan13g0511 | 920 | PANTHER | - | 147 | 396 | - | - | |
Lan13g0511 | 920 | PANTHER | - | 425 | 917 | - | - | |
Lan13g0511 | 920 | Coils | Coil | 737 | 757 | - | - | |
Lan13g0511 | 920 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 659 | 727 | IPR013083 | - | |
Lan13g0511 | 920 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 579 | 918 | IPR027417 | - | |
Lan13g0511 | 920 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 746 | 910 | IPR001650 | - | |
Lan13g0511 | 920 | Pfam | Helicase conserved C-terminal domain | 750 | 864 | IPR001650 | - | |
Lan13g0511 | 920 | MobiDBLite | consensus disorder prediction | 109 | 124 | - | - | |
Lan13g0511 | 920 | Pfam | SNF2-related domain | 224 | 643 | IPR000330 | GO:0005524|GO:0140658 | |
Lan13g0511 | 920 | MobiDBLite | consensus disorder prediction | 23 | 52 | - | - | |
Lan13g0511 | 920 | Pfam | Zinc finger, C3HC4 type (RING finger) | 665 | 705 | - | - | |
Lan13g0511 | 920 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 425 | 917 | - | - | |
Lan13g0511 | 920 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 147 | 396 | - | - | |
Lan13g0511 | 920 | SMART | helicmild6 | 781 | 864 | IPR001650 | - | |
Lan13g0511 | 920 | ProSiteProfiles | Zinc finger RING-type profile. | 666 | 706 | IPR001841 | - | |
Lan13g0511 | 920 | Gene3D | - | 210 | 353 | IPR038718 | - | |
Lan13g0511 | 920 | SUPERFAMILY | RING/U-box | 663 | 710 | - | - | |
Lan13g0511 | 920 | SMART | ring_2 | 666 | 705 | IPR001841 | - | |
Lan13g0511 | 920 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Lan13g0511 | 920 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 221 | 495 | IPR014001 | - | |
Lan13g0511 | 920 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 162 | 568 | IPR027417 | - | |
Lan13g0511 | 920 | SMART | ultradead3 | 204 | 513 | IPR014001 | - | |
Lan13g0511 | 920 | Gene3D | - | 375 | 584 | IPR038718 | - | |
Lan13g0511 | 920 | Coils | Coil | 374 | 394 | - | - | |
Lan13g0511 | 920 | Gene3D | - | 585 | 918 | IPR027417 | - | |
Lan13g0511 | 920 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Lan13g0511 | 920 | CDD | SF2_C_SNF | 748 | 875 | - | - | |
Lan13g0511 | 920 | ProSitePatterns | Zinc finger RING-type signature. | 681 | 690 | IPR017907 | - | |
Lan13g0511 | 920 | CDD | DEXDc_SHPRH-like | 208 | 516 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan13g0511 | Lan-Chr13 | 3839267 | 3846564 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan13g0511 | 122 | 920 | RAD5 or RAD16-like Gene Family | AT1G05120 | 66.333 | 0.0 | 1087 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Lan13g0511 | SNF2_N | 7.4e-50 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan13g0511 | K15083 | - | gmx:100786366 | 1294.26 |