Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0511 ATGGAACTTCGTTCTCATCGACGACGCCTTTCCGAATCATCACTCTCCGGAACAGGGAAGGAGAAGCAACCAAGAGATGGCATTGGGGAAGATGAAACTAATAGCAAGTGCAGCAATGACACCAATGAACATGTTCATGACATTTCTTCAGATTCTGATTTCAATTGTGAAGATGAAGAGTTCGGTGTGAACTTCATTCCTGACTTGAATGAAGAACCAATTTCAAGCATCAGTGTTTCTGATGGAGAAGATATTCTCTCTGACTCATATGATGCTATAGAGCCTTTATTGAATAGTGGAAAGTCGCAGTCCAGAAGGAAAAGAAAAAAATCCGGCTTCGGAGAACCAAGTGATGGTGATAGAGTGGTGGAGAATGGGGATGATGAGGAACATTTGATGGTTTTTCAGCAATCAGCCCCTATTAATTTGACCAAGACAAAAAAGAAGAAAAAAGGGAAAAGGACAAGAAAGGAAGATTCAAAGCCAGTGTTATTGTGGCATGCTTGGGAAGAGCAGCAAGAGAAATGGGTCGATGAGAATTTATTGGAAGATTTTGACATAGATCACCAGAGTGAAGTAATGAATGAAACTGTCGAGCCATCCTCAGATCTGATTATGCCTTTGCTAAGGTATCAAAAGGAATGGTTAGCATGGGCTTTGAAACAGGAAAGTTCTGTGACTAAAGGAGGAATCCTTGCTGACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCACCAGATGAGTTGTGAAGCAGATGAACCATCATCTTCACCAGGTTCATCTACAGTCTTGCCTGCCATCAAAGGCACACTTGTCATCTGTCCTGTGGTTGCTGTCACTCAATGGGTTAGTGAGATTGATCGGTTTACTTTGAAAGGAAGCACCAAGGTGTTGGTTTATCACGGGGCAAAGAGAGAGAAGAGTGGTGAACAGTTCTCAGAGTATGACTTTGTAATAACAACATACTCTATTGTGGAGTCTGAATACAGAAAGCATATGATGCCTCCTAAGGAGGAGTGCCAATATTGTGGAAAATTATTTAACCCAAGGAGTTTAACTTCTCATCAGAGGTATTTTTGTGGGCCTGGTGCTACTAGAACAGATAAACAAGCAAAGCAAATAAAGAAAAAGAAAAGAGATCTTACTAAGAAGAAGCTCAAAGAATTGAAGTCTTGGGACGAAGAATTGGAAAAGGGTTTTATGAAGAAAAAGAATTTGGAATTGCGGTCGAGGACAAAAGATTCAGATACCAAAGACAGGGACAAGTCATTTCTACATGCTGTGAAGTGGCAGCGTATCATACTGGATGAGGCACACTATATAAAATCTAGACATTCTAACACTGCAAAAGCAGTTCTGGCTTTAGAGTCCTCCTACAGATGGGCATTAAGTGGCACTCCCCTTCAGAACCGGGTTGGAGAGCTGTATTCTTTGGTGCGATTTCTGCAAATAATTCCTTATTCATATTACTTATGCAAGGACTGTGATTGCAAGATACTTGATCATAGCTCCTCTAGACAATGTTCAAACTGCAACCACAGTACTGTTAGACATTTCTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCATATGGGTATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAGTTTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCCGACCTTGCACTTCCGCCTAGAATTGTTTCATTAAGGAAGGATAGCCTGGACATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGTCACAGTTTAATACATATGTTGAAGCAAATACTCTCATGAATAATTATGCTCATATATTTGACCTCCTTACACGATTGCGTCAGGCTGTTGATCACCCATATCTTGTGGTATATTCTCCAACTGCAGCATTAAGAGGTGGGAATTTAGCTGGTAATGGTACTGTTGAACAAGAATGTGGCCTTTGTCATGATCAAGTAGAAGATCCTGTGGTTACTTCTTGTGAGCATGTTTTTTGCAAGTCATGCTTGATAGACTTTTCTACTTCCTTGGGACGAGTATCATGCCCCTCATGCTCTAAATTGCTTACTGTTGATTTAACTTCCAACATGGTTGCTGGGGTTCATGCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAACAGAATTCAGCTCGAAAATTTTCAGACAAGCACTAAAATAGAGGCATTGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTACACATCATTCTTGGATCTCATAAACTACGCCCTGAACAAGTCAGGCGTATCTTGTGTTCAATTGAATGGACAAATGTCATTGCCTGCTCGGGATGCTGCCATTAAGAGGTTTATTGATAACCCCGAATGCAGAATTTTTCTCATGAGCTTGAAAGCAGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACCGAATTCACCGAATAGGGCAATACAAACCAATCAGAATTGTAAGGTTTGTCATTGAAAACACAATAGAGGAGAGGATTTTGAAGTTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATTGGTGGTTCTTCTGAGGCTCTGGGGAAATTGACCGAGGCTGACTTGAAATTTCTCTTTGTTACCTAA 2763 0.4068 MELRSHRRRLSESSLSGTGKEKQPRDGIGEDETNSKCSNDTNEHVHDISSDSDFNCEDEEFGVNFIPDLNEEPISSISVSDGEDILSDSYDAIEPLLNSGKSQSRRKRKKSGFGEPSDGDRVVENGDDEEHLMVFQQSAPINLTKTKKKKKGKRTRKEDSKPVLLWHAWEEQQEKWVDENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKHMMPPKEECQYCGKLFNPRSLTSHQRYFCGPGATRTDKQAKQIKKKKRDLTKKKLKELKSWDEELEKGFMKKKNLELRSRTKDSDTKDRDKSFLHAVKWQRIILDEAHYIKSRHSNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIIPYSYYLCKDCDCKILDHSSSRQCSNCNHSTVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQSQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALRGGNLAGNGTVEQECGLCHDQVEDPVVTSCEHVFCKSCLIDFSTSLGRVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0511 920 MobiDBLite consensus disorder prediction 96 124 - -
Lan13g0511 920 PANTHER - 147 396 - -
Lan13g0511 920 PANTHER - 425 917 - -
Lan13g0511 920 Coils Coil 737 757 - -
Lan13g0511 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 727 IPR013083 -
Lan13g0511 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 918 IPR027417 -
Lan13g0511 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 910 IPR001650 -
Lan13g0511 920 Pfam Helicase conserved C-terminal domain 750 864 IPR001650 -
Lan13g0511 920 MobiDBLite consensus disorder prediction 109 124 - -
Lan13g0511 920 Pfam SNF2-related domain 224 643 IPR000330 GO:0005524|GO:0140658
Lan13g0511 920 MobiDBLite consensus disorder prediction 23 52 - -
Lan13g0511 920 Pfam Zinc finger, C3HC4 type (RING finger) 665 705 - -
Lan13g0511 920 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 425 917 - -
Lan13g0511 920 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 147 396 - -
Lan13g0511 920 SMART helicmild6 781 864 IPR001650 -
Lan13g0511 920 ProSiteProfiles Zinc finger RING-type profile. 666 706 IPR001841 -
Lan13g0511 920 Gene3D - 210 353 IPR038718 -
Lan13g0511 920 SUPERFAMILY RING/U-box 663 710 - -
Lan13g0511 920 SMART ring_2 666 705 IPR001841 -
Lan13g0511 920 MobiDBLite consensus disorder prediction 1 15 - -
Lan13g0511 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 495 IPR014001 -
Lan13g0511 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 568 IPR027417 -
Lan13g0511 920 SMART ultradead3 204 513 IPR014001 -
Lan13g0511 920 Gene3D - 375 584 IPR038718 -
Lan13g0511 920 Coils Coil 374 394 - -
Lan13g0511 920 Gene3D - 585 918 IPR027417 -
Lan13g0511 920 MobiDBLite consensus disorder prediction 1 55 - -
Lan13g0511 920 CDD SF2_C_SNF 748 875 - -
Lan13g0511 920 ProSitePatterns Zinc finger RING-type signature. 681 690 IPR017907 -
Lan13g0511 920 CDD DEXDc_SHPRH-like 208 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0511 Lan-Chr13 3839267 3846564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0511 122 920 RAD5 or RAD16-like Gene Family AT1G05120 66.333 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan13g0511 SNF2_N 7.4e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0511 K15083 - gmx:100786366 1294.26