Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0509 ATGATAGCAAAAGACAGCAACCTACAAGTCACATTCTCCAAACGCCGCACTGGGCTATTTAAGAAAGCGAGCGAACTTTGCACTCTTTGTGACGCAAAAGTTGCGCTAGTTGTCTTTTCTCCTGCAAACAAGGCTTTCTCCTTTGGCGACCCTAGTATTGATGTTGCCGTAGACCGCTATCAAATGAGGGACCAACCACTGAACCTAGGGAACAGGCAATATCTTGAGGCTCACAGAAATGCTAATAATATTGTTGAGGGTGCTGCAACTACTGTTGTTGCTACTGCTGCTACTGCTATCCCACCTCCTCCTCACTTTTTTACAGGTGGTGCATCTTCTTCAAACAACCCTTTGCCACCACCACCTCAGCCACCAACTCAGGAGTATCAGGTGCAGCCGCCACCGCCACCTCAACAGTTTCCTGTGAATCCACAACCACCACCTCAACAGTTTATGCATCCCAACCACCACCTCAGTAGTTTATACAGCCACAACCACTACCTCAGCAGTTTCCGATGTATCCACCACCACCACATATGCTTCAGAACCAGTCTATAA 558 0.4785 MIAKDSNLQVTFSKRRTGLFKKASELCTLCDAKVALVVFSPANKAFSFGDPSIDVAVDRYQMRDQPLNLGNRQYLEAHRNANNIVEGAATTVVATAATAIPPPPHFFTGGASSSNNPLPPPPQPPTQEYQVQPPPPPQQFPVNPQPPPQQFMHPNHHLSSLYSHNHYLSSFRCIHHHHICFRTSL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0509 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 48 IPR002100 GO:0003677|GO:0046983
Lan13g0509 185 MobiDBLite consensus disorder prediction 115 151 - -
Lan13g0509 185 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lan13g0509 185 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 2 77 - -
Lan13g0509 185 MobiDBLite consensus disorder prediction 104 155 - -
Lan13g0509 185 SMART madsneu2 1 51 IPR002100 GO:0003677|GO:0046983
Lan13g0509 185 PANTHER MADS BOX PROTEIN 2 77 - -
Lan13g0509 185 Gene3D - 5 74 IPR036879 GO:0003677|GO:0046983
Lan13g0509 185 PRINTS MADS domain signature 14 29 IPR002100 GO:0003677|GO:0046983
Lan13g0509 185 PRINTS MADS domain signature 29 50 IPR002100 GO:0003677|GO:0046983
Lan13g0509 185 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0509 Lan-Chr13 3807997 3808766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0509 2 61 Type I MADS-box Gene Family AT1G65360 68.333 6.67e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan13g0509 SRF-TF 4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0509 - - lang:109363513 283.108