Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0506 ATGAGCTTTTTTCTCAAAGTGAAAGACCCTCTTGGAAGCATGGTTAAGGGCAGAATATTACTGCTCTTGGTTTTTGGCTTGTGGATTTCCACAGAAGGTGTGGGGATGAAAGAAACTTCACCATCTAGCACTGTGAATTCTACTGTTTCTTCAAGACCCAAGGTTGTTAAAATTGGAGCCTTGTTTACTTATAATTCTGTCATTGGAAGGTCAGCTAAACCAGCAATTATAGCTGCTGTTAAGGATGTTAACTCTAATAGGAATGTTCTCCCTGGCATTGAACTGCAAGTTATTTTACGCGATACAAATTGCAGTGGATTTCTTGGCACAGTGGAAGCTCTTCAGTTGATGGAGAATGAAGTGGTTGCTGCTGTTGGTCCACAATCCTCGGGAATAGCTCATGTCATTTCGCATGTGGCTAATGAGCTCCATGTACCTCTTCTATCATTTGGGGCAACTGACCCAACTCTATCCGCATTGCAATACCCATATTTTATTCGGACAACTCAGAGTGACTACTATCAGATGAATGCAATTGTGGAATTTATTGAGTATCACAGGTGGAGGGAGGTCATTGCCATATTTGTAGATGATGATAATGGAAGGAATGGAGTTTCTGCATTAGGCGATGCACTATCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCACTCTCTCCTGAAGCTTCACAGAGTGATATCAGCAACTTGTTAAATGAAGTAAACTTAATGGAGTCGAGGATTTATGTTCTTCATGTTAATCCTGATTCTGGTTTGGCAATTTTCTCCATTGCGAAGAAGCTGCAAATGATGAGCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAATGCTGGATTCAATAGTGTCAGCTCATACAGGCACAATGAATATTTTACAAGGGGTTGTGGCTTTCCGTCATCACATTCCTGATACTGATCTGAAGAAGAGTTTTATCTCTAGGCTGAAAAGCATTAAAGACAAGGAAACTGAAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCATAGACGTGTTTCTCAACGAAGGTGGGAATATATCTTTCTCTAGTGACCCTAGATTGCACGACACGAAAGGAAGCATGCTGAATTTAGCAGCACTTCGCACTTTTGATGGAGGTGATCAGTTTCTCCATACAATTTTGAGAATGAACTTTACTGGTTTGAGTGGTCAGATTGAGTTTGACACAGATAAGAATTTAATTCATCCAGCATATGATATTCTAAATATTGCTGGAACTGGATTGCGTACAATTGGTTATTGGTCTAATCACTCTGGTCTTTCAGTATTAGCTCCTGAAACATTGTACACGAAAAAATCATCCAACACTTCTTCAACAAGCAATCAAAAGCTGAGCAGTGTGATATGGCCTGGAGATGCTACAACAACACCTAAGGGATGGGTATTTCCTAACAATGGTAAGCCACTGCGAATAGCAGTGCCAAACCGAGTAAGTTACAAGGAGTTTGTTGCTAAAGACAATAACCCACCAGGGGTACAAGGCTTTTGCATTGATGTCTTTGAAGCAGCCATAAACTTATTGCCTTATCCTGTCCCACGACAATATATGCTATATGGAAATGGTGATCGGAATCCTAACTATAACGACCTTGTGGATCAAGTTGCACAAAATAACTATGATGCAGCTGTTGGAGATGTTACAATTGTGACAAACAGGACTAGATATGTGGATTTTACTCAACCTTTCATGGGATCAGGGCTTGTTGTTGTTGTTCCGGTCAAGGAGGAGAAATCAAGCCCTTGGGCTTTCCTTAAGCCATTCACTGCTCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTGGGAACCGTGGTGTGGATTCTTGAGCACCGATTCAATCCAGAATTCCGTGGTTCACCAAGGAAACAACTTATAACAGTCTTTTGGTTTAGTCTCTCAACCATGTTTTTCGCACACAGAGAGAATACTGTGAGTACTCTTGGTAGATTGGTGCTGATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACGGTGCAGCAATTGTCATCACAAATCGAAGGAATAGACGGCTTGATCTCAAGTACTCAACCAATTGGAATTCAAGATGGGTCATTCGCACGGAAGTATCTTATAGAGGAACTCCATATTGCTGAATCAAGGATAGTAACTTTGAAAAACATGCAAGGTTATATAGATGCCCTTCAGCGTGGACCGAAATATGGAGGGGTTGTCGCTGTCGTTGATGAGCTTCCTTATATTGAGACCTTGATGTCCAGCACTGATTGTAAGTTCCGAACCGTTGGACAGGAATTCACTAAAAGTGGCTGGGGATTTGCATTTCAAAGGGACTCTCCCCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCTGAGAATGGTGATCTTCAAAGGATGCATGACAAATGGCTTAAGAAAATGGAGTGTTCAACCAATGATGTTGATTCAAATAAACTATCTTTGAGAAGCTTTTGGGGCCTCTTTCTCATATGTGGCATTGTATGTGTCCTTTCACTAATTATATTCTTTGTTAGAGTGTTCTTCCAATATACTATGTTCACTCCAGAGGCTGAAGAGGGTCATGAAATTCAACCAACCAAGTATAGAAGAACATCCAAAACTCAAAGCTTCAAGGACTTGATTGTTTTTGTAGATAAAAAGGAAAAAGAAATTAAAGAGATACTTAGGGAAAAGAGTAAGAAAAGGAGACGTAGCAAGAGTTTGGATGGGATTTCAAATTTATCCACCTAA 2841 0.4041 MSFFLKVKDPLGSMVKGRILLLLVFGLWISTEGVGMKETSPSSTVNSTVSSRPKVVKIGALFTYNSVIGRSAKPAIIAAVKDVNSNRNVLPGIELQVILRDTNCSGFLGTVEALQLMENEVVAAVGPQSSGIAHVISHVANELHVPLLSFGATDPTLSALQYPYFIRTTQSDYYQMNAIVEFIEYHRWREVIAIFVDDDNGRNGVSALGDALSKKRAKISYKAALSPEASQSDISNLLNEVNLMESRIYVLHVNPDSGLAIFSIAKKLQMMSSGYVWIATDWLPSMLDSIVSAHTGTMNILQGVVAFRHHIPDTDLKKSFISRLKSIKDKETESFNSYAFYAYDSVWLAAHAIDVFLNEGGNISFSSDPRLHDTKGSMLNLAALRTFDGGDQFLHTILRMNFTGLSGQIEFDTDKNLIHPAYDILNIAGTGLRTIGYWSNHSGLSVLAPETLYTKKSSNTSSTSNQKLSSVIWPGDATTTPKGWVFPNNGKPLRIAVPNRVSYKEFVAKDNNPPGVQGFCIDVFEAAINLLPYPVPRQYMLYGNGDRNPNYNDLVDQVAQNNYDAAVGDVTIVTNRTRYVDFTQPFMGSGLVVVVPVKEEKSSPWAFLKPFTAQMWCVTGAFFLFVGTVVWILEHRFNPEFRGSPRKQLITVFWFSLSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDGLISSTQPIGIQDGSFARKYLIEELHIAESRIVTLKNMQGYIDALQRGPKYGGVVAVVDELPYIETLMSSTDCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQRMHDKWLKKMECSTNDVDSNKLSLRSFWGLFLICGIVCVLSLIIFFVRVFFQYTMFTPEAEEGHEIQPTKYRRTSKTQSFKDLIVFVDKKEKEIKEILREKSKKRRRSKSLDGISNLST* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0506 946 Gene3D - 725 838 - -
Lan13g0506 946 PIRSF IGluLR_plant 14 945 IPR017103 -
Lan13g0506 946 SUPERFAMILY Periplasmic binding protein-like II 470 835 - -
Lan13g0506 946 Coils Coil 914 934 - -
Lan13g0506 946 Gene3D - 171 444 - -
Lan13g0506 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 69 85 - -
Lan13g0506 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 129 157 - -
Lan13g0506 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 342 354 - -
Lan13g0506 946 CDD PBP1_GABAb_receptor_plant 57 446 IPR044440 -
Lan13g0506 946 Pfam Receptor family ligand binding region 73 429 IPR001828 -
Lan13g0506 946 Pfam Bacterial extracellular solute-binding proteins, family 3 506 835 IPR001638 -
Lan13g0506 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 926 - -
Lan13g0506 946 Pfam Ligand-gated ion channel 836 864 IPR001320 GO:0015276|GO:0016020
Lan13g0506 946 SUPERFAMILY Periplasmic binding protein-like I 51 485 IPR028082 -
Lan13g0506 946 SMART GluR_14 494 836 IPR001320 GO:0015276|GO:0016020
Lan13g0506 946 PANTHER GLUTAMATE RECEPTOR 3.4 46 926 - -
Lan13g0506 946 Gene3D - 75 419 - -
Lan13g0506 946 CDD GluR_Plant 491 834 - -
Lan13g0506 946 Gene3D - 604 723 - -
Lan13g0506 946 Gene3D - 495 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0506 Lan-Chr13 3756344 3761603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0506 1 801 Ion Channels AT1G05200 63.985 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0506 K05387 - gmx:100802782 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1539 8 22458147 22464227 Lan13g0506 13 3756344 3761603 LSH
Lan6g1884 6 29911747 29916113 Lan13g0506 13 3756344 3761603 PCT
Lan3g0021 3 208009 211946 Lan13g0506 13 3756344 3761603 PCT
Lan13g0506 13 3756344 3761603 Lan6g1883 6 29907748 29910396 PCT
Lan13g0506 13 3756344 3761603 Lan10g0032 10 180108 184925 PCT