Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0503 ATGTTCCAGCCAAATCTGGGTCAACTTCACAACGCACTTGACAACATGGCTCAGAACACTTCTGAAAGTGATATCCCTAGAATGGATGAGTTTGAAAGGTCTGGTAGTGAAAACCAGGATGGTGCATCTGGTGAAGACCAAGAACCAAGCGCAAAGAAGAAGAAACGCTTTCACCGCCACACACAACACCAGATTCAAGAAATGGAAGCTTTCTTCAAGGAGTATCCACACCCTGATGACAAGCAAAGGAAGGAACTGGGCCGGGAGCTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATGAAGACCCAACATGAGCGCCATGAGAACACCCAGCTCAGAAACGAAAATGACAAACTTCGGGCTGAAAACATGAGGTACAGGGAAGCTTTTAGCAATGCAACATGTCCTAATTGTGGTGGACAAACTTCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGTTTGAAAATGCAAGGCTAAGAGAAGAGATTGAACGCATTTCTGCAATTGCTGCCAAGTACGTGGGAAATCCAGTGGTGAATTACTCAAACCTTTCCTCTTCTCTTCCTTCACGCCCATTAGAACTTGGAACTGGTGGCAGTTTTGGTGGCCAGCTAGCTGGGATTGGTGGTGGTGATATGTATGGAGGTGGTGGAGATCTTCTGAGGTCAATTAACGGGCCCAGTGAAACTGATAAGCCAATAATAATTGAGCTTGCTGTTGCAGCTATGGAGGAGCTTATTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTTACCACCCACACCCAGGATGGAACTTCCATTGTGCTAAATGAAGATGAATACCTTAGGTCATTTCCTAGAGGAATTGGCCCAAAACCCACTGGCTTCAAATCTGAAGCTTCTAGAGAAACTACTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAATCAGTGGTCCACAGTGTTCTCTGGTATTGTCTCAAAAGCTATGACTCTGGAAGTGCTATCAACGGGGGTAGCAGGGAACTGCAATGGTGCCTTACAAGTGATGACAGCAGAACTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAGTATTATTTTGTAAGGTATTGTAAACAACATATGGATGGAACTTGGGCAGTAGTGGATGTTTCTTTGGATAATCTGCGTCCTAGTCCTTCACCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAGGGTAACATGGGTTGAGCATGTGGAAGTGGTTGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAGTTCTGGAAATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGCCAATGTGAAAGGCTTGCTAGTGCAATGGCAACGAACATACCCACAGTAGATATTGGTGTAATAACAAACCAAGAAGGGAGGAAGAGTATGCTGAAATTGGCTGAGAGAATGGTTATGAGCTTTTGTGGTGGAGTGAGTGCTTCTACTACTCACACATGGACCACACTGCAGACTGGGTCAGGATCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCAGGAAGACCCCCTGGTATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTACAAGTTCCACCTAAAAGAGTTTTTGATTTCCTTCGTGATGAAAATTCCAGAAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGACGAGAAACTGGAAATTGTGTATCTTTACTTAGAGTGAATAGTGCCAATTCAAGCCAGGGTAACATGTCAATACTACAAGAGAGTTGCAGTGATTCAACATGCTCTTTTGTAATCTATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTAGCCCTTCTTCCTTCAGGATTTGCAATCCTCCCAGATGGGTCAGCAACACATGGAAATGGCATTGGTGAAACTGGGTCTGGTGGGTCACTTTTGACTGTGGCATTTCAAATATTGGTTGATTCAGTTCCAACAGCTAGGCTTTCTCTTGGTTCTGTTGCTACTGTTAATAATCTTATTGCTTGCACTGTTGAGAGAATCAAGGCTGCATTATCTCCTGAACTTCAAGATTAA 2193 0.4355 MFQPNLGQLHNALDNMAQNTSESDIPRMDEFERSGSENQDGASGEDQEPSAKKKKRFHRHTQHQIQEMEAFFKEYPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNENDKLRAENMRYREAFSNATCPNCGGQTSIGEMSFDEHHLRFENARLREEIERISAIAAKYVGNPVVNYSNLSSSLPSRPLELGTGGSFGGQLAGIGGGDMYGGGGDLLRSINGPSETDKPIIIELAVAAMEELIGMAQMGEPLWFTTHTQDGTSIVLNEDEYLRSFPRGIGPKPTGFKSEASRETTVVIMNHVNLVEILMDVNQWSTVFSGIVSKAMTLEVLSTGVAGNCNGALQVMTAELQVPSPLVPTREYYFVRYCKQHMDGTWAVVDVSLDNLRPSPSPRCRRRPSGCLIQEMPNGYSRVTWVEHVEVVDRGVHNLYKQLVSSGNAFGAKRWVATLDRQCERLASAMATNIPTVDIGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLQTGSGSDDVRVMTRKSVDDPGRPPGIVLSAATSFWLQVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRETGNCVSLLRVNSANSSQGNMSILQESCSDSTCSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGSATHGNGIGETGSGGSLLTVAFQILVDSVPTARLSLGSVATVNNLIACTVERIKAALSPELQD* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0503 730 MobiDBLite consensus disorder prediction 1 62 - -
Lan13g0503 730 SUPERFAMILY Bet v1-like 241 471 - -
Lan13g0503 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 726 IPR042160 -
Lan13g0503 730 SMART START_1 247 469 IPR002913 GO:0008289
Lan13g0503 730 CDD START_ArGLABRA2_like 242 468 - -
Lan13g0503 730 Pfam Homeodomain 58 109 IPR001356 GO:0003677
Lan13g0503 730 Gene3D - 39 128 - -
Lan13g0503 730 Coils Coil 110 137 - -
Lan13g0503 730 CDD homeodomain 53 112 IPR001356 GO:0003677
Lan13g0503 730 SUPERFAMILY Bet v1-like 488 721 - -
Lan13g0503 730 MobiDBLite consensus disorder prediction 1 24 - -
Lan13g0503 730 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 19 726 - -
Lan13g0503 730 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lan13g0503 730 SMART HOX_1 52 115 IPR001356 GO:0003677
Lan13g0503 730 Gene3D - 247 461 IPR023393 -
Lan13g0503 730 SUPERFAMILY Homeodomain-like 44 111 IPR009057 -
Lan13g0503 730 ProSiteProfiles START domain profile. 238 472 IPR002913 GO:0008289
Lan13g0503 730 Pfam START domain 248 469 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0503 Lan-Chr13 3732757 3739585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0503 1 727 Homeobox Transcription Factor Family AT1G05230 73.613 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan13g0503 START 9.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0503 K09338 - gmx:100809556 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0426 7 3005395 3031720 Lan13g0503 13 3732757 3739585 LSH
Lan8g1535 8 22433763 22440151 Lan13g0503 13 3732757 3739585 LSH
Lan6g1885 6 29916912 29924173 Lan13g0503 13 3732757 3739585 PCT
Lan13g0503 13 3732757 3739585 Lan6g1885 6 29916912 29924173 PCT