Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0490 ATGGTAAGAGTCCCTTGCTGTGAGAAGAATAATGGACTCAAGAAAGGTCCATGGACACCAGAGGAAGATGTTAAGCTCATCAACCACATTCAGAATCATGGACCAGGAAAATGGCGAAATCTACCCAAGATTGCTGGTCTGCAAAGGTGTGGCAAGAGTTGCCGCCTCCGATGGGCAAATTATCTAAGACCCGACATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACTATTATTCAATTGCATAGTGTCATGGGAAACAAATGGTCTGCTATAGCAACAAGGTTACCAGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACTCATATAAAGAAGAGGTTGCTTCGAAGTGGAATAGACCCAGTTACTCATGCACCACGCCTTGACCTACTTAACATGTCCTCTATTCTGAGGACAATGTTGGGGAACTCTTCCCTTTTGAATCTGCAAGGATTAATTGGTGCACAAGCTTTGATGAACCCTGAGTTGTTAAACCTAGTTGCCACTGCCTCTCTTTTGGCTTCACAGAATAATCCACAACAACTACAATATAATGGGAATTGTCAAACACAAAACCAAGAGTTTAGTCAGTTCCAAACACCAACTCAAAGCAACAATGTGGGTGGCTTCATGGGAAACTTAAGATGTTCAAGTTCATTACAGAATTCAATTCCTACCTATTTGGATGAGAACATTGTTTTGCAACAAAACCAAGTTGAAGAATTGCTAGGGAATGATCAGGTTTTGGTTCATCAGTCTGTAAATAATGCAAACAAAATCATAGGCTATGATTCAGTTCTATCGAGCCCAAACCACTTGAATAATTCATCATCCACGTATGTGAGTAGCAGCACTAATGAGGAAGAGAGGGATAGCTATTGCAGCGAGTTGTTCAACTTCGAAATTCCTGAGAATCTGGACATTAGTGACTTCTTGTAA 948 0.4051 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLLNMSSILRTMLGNSSLLNLQGLIGAQALMNPELLNLVATASLLASQNNPQQLQYNGNCQTQNQEFSQFQTPTQSNNVGGFMGNLRCSSSLQNSIPTYLDENIVLQQNQVEELLGNDQVLVHQSVNNANKIIGYDSVLSSPNHLNNSSSTYVSSSTNEEERDSYCSELFNFEIPENLDISDFL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0490 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lan13g0490 315 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lan13g0490 315 PANTHER TRANSCRIPTION FACTOR MYB41 1 310 - -
Lan13g0490 315 Gene3D - 70 117 - -
Lan13g0490 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 310 - -
Lan13g0490 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan13g0490 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan13g0490 315 Gene3D - 14 67 - -
Lan13g0490 315 SMART sant 14 64 IPR001005 -
Lan13g0490 315 SMART sant 67 115 IPR001005 -
Lan13g0490 315 CDD SANT 70 113 IPR001005 -
Lan13g0490 315 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lan13g0490 315 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lan13g0490 315 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan13g0490 315 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0490 Lan-Chr13 3620571 3622218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0490 1 315 MYB Transcription Factor Family AT4G21440 49.859 1.25e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan13g0490 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0490 K09422 - gmx:102668351 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0454 7 3331343 3332721 Lan13g0490 13 3620571 3622218 LSH