Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0474 ATGGCCATGGATCAGTACTTTGAGGAGGCTGTGCCTGAAATCGGTTCCTTTGAAGATAAACCATATTCGGGAAAATGGAAATCTTCCAGTGATGTCATTGCAGATTCCGATACAAATGCATCTGGTGGCTTTGACTGCAACATCTGCTTAGAGCGTGTCGAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCTTGCATCTATAAATGGCTCTCTTCCGAAACAGAAGAGCAGCAGAAGTCACAATGTCCAGTATGCAAATCCGAAGTTTCTCGATCCTCCCTAGTTCCGTTGTATTGCCACGGCCAAACTAGAAGAGCTTCTGAAGGAAAGGGTCATCAAGTAGGGACAGTCATACCGCCAAGACCCCCAGCTCCGACATCTTATAATACTACATCTGCTTCCCATCCTACTTCTCAAAGCTATCATCGTCATCATCCTCATCATCCTTATCATCCTCATTATCCGCAACAATTGAACTCAATTCCAACCAGTTACACTTCACCAATGCTTAGCACAAGTAGTTTGCAAGACATGCCATTTGGACTCTTTGGTGGTATGATATATTCTAGGGTCTTTAGTAACCAGGTGACAGACATTTTTACAAATCCAAATTCATATGATAACTCATGGAACAGTAACCCAAGGTTCAGAAGTCATTTGATGGAATTTGATAAATCACTGAGTAGAATCTGTTATTTCCTCCTATGCTTCCTAGTTTTTTGCCTTCTCATGTTCTGA 750 0.4253 MAMDQYFEEAVPEIGSFEDKPYSGKWKSSSDVIADSDTNASGGFDCNICLERVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHQVGTVIPPRPPAPTSYNTTSASHPTSQSYHRHHPHHPYHPHYPQQLNSIPTSYTSPMLSTSSLQDMPFGLFGGMIYSRVFSNQVTDIFTNPNSYDNSWNSNPRFRSHLMEFDKSLSRICYFLLCFLVFCLLMF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0474 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan13g0474 249 MobiDBLite consensus disorder prediction 109 150 - -
Lan13g0474 249 SUPERFAMILY RING/U-box 43 103 - -
Lan13g0474 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 120 IPR013083 -
Lan13g0474 249 ProSiteProfiles Zinc finger RING-type profile. 46 90 IPR001841 -
Lan13g0474 249 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lan13g0474 249 Pfam Zinc finger, C3HC4 type (RING finger) 46 89 IPR018957 GO:0046872
Lan13g0474 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 249 - -
Lan13g0474 249 SMART ring_2 46 89 IPR001841 -
Lan13g0474 249 CDD RING-HC_AtRMA_like 44 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0474 Lan-Chr13 3506514 3508864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0474 38 249 C3H Transcription Factor Family AT4G28270 31.982 1.55e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0474 K10666 - gmx:100785491 287.73