Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0470 ATGGGTTGTATATGTTCGAAGAGTTCAGCTGTGGAAGACAGCCCGGAAGGTATCGAAAATAAACTATCACCATCTAGCACAAGGCCCTCAGAGTTGAGTTCCTTGCGATTGAATTCCACAAAAAAGGTTGAGGCGGTTAGCGTGAAAGATAAGTCACTAGATAGTCATAGTAGTGATGTGAAAGTTTCATTAGTTAATAAGAAAGACAATGGTTCAGTGAAATTGTATGATGATGAAAATAGAATGAATAGAATAGAGAAACCTGAATTGGCTGTTTTTGATCATCCTAGTTTTGGAAGGGTTCCAAAGGCTGTTGAGGGAGAGCAAGTTGCAGCCGGATGGCCGTATTGGCTTTCTTCTGTTGCCAGTGAAGCTATCAACGGATGGGTACCACGGAGTGCAAACACTTTTGAGCGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACACGATTTGACTAACCAAAAGATTGTTGCTTTGAAGAGGGTACGCTTTCATAATCATGATCCTGAGAGTGTTAAATTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACGTAATAAAGTTGGAGGGCTTGATAACATCTTCAATGTCTCACAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGCATCAAATCCTGCCATTAAGTTCTCTGAACCTCAGCTGAAATGCTATATGCATCAACTTCTTAGTGGACTGGATCATTGTCACAGTCATGGTGTCCTCCACCGTGACATAAAAGGCTCAAATCTTCTCATTGACAATAACGGTGTCTTGAAAATTGCGGATTTTGGTTTGGCAAGTCATTTTGACCCTGATCACAATGTTCCCTTGACAAGCCGTGTAGTAACTCTGTGGTATAGACCACCTGAACTTTTACTCGGAGCAAATCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATATTGGGTGAACTATACACAGGCAGACCCATATTGCCAGGAAAAACGGAGGTTGAGCAGTTGCATCGAATTTTTAAACTTTGTGGCTCACCATCTGAGGATTATTGGCTTAAATTGCGGTTGCCACATTTAACTATATTCAAGCCTGCAAACAATTATAGACGGTGTGTTGCAGAAGCATTCAAGGAATATCCATCTCCTGCTGTTAGGCTTATAGCGACCCTCCTTTCTGTAGATCCTGAACATCGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCTCTGGCTTGTGATCCATCAAGTTTACCAAAATACCCTCCCAGCAAAGAGATCGACACCAGATTGCAGGATGAAGCAAACAGAAGGGAAGGTGCTGTTGGAGGTAAAGAGCAAAAAGTTTGGTCAGGAGTTAGACAAGAAAAAGGACCTAGGGCACATGTCACAGCAGCTGACCCAGGCATGTTATCACAGCAAGGTGAATTGCGGAACCCTCATAGAGAGCCTGTGTCTGGATTTCTGCTTTTCCCTCCCAACAAACACTCAGAAGATGTTAAAGAAACGGGAAATAATATATCTGGGCGTCCCCGTAAGAGGCCTTCACGTTCAGGTCCATTGGTTCCTGGTTATAGATGGGTAAAGAGTGGGAAGGAAGTTGATGATGGGGATCCTGTTTCAAACAGAATGAACCAATCAAAACTATATGGTCTAACAGCATCTAGGCCTATGTCTTCTCAAGATGCAGAAGAAAAGCCAGTTCAGTTGCACCACGGAAAACCAATTGAAGTAAGAAAATCTGTGGAGTCAACTAGTGGATCAGATTCAAGAAGGCAGGACCAAAGAAGGATTGATGATCTCACTCAAATTGAAAGTGGAAGAGTTCCTAGTGAAAAATTAACCCCGGTTTTTCAGGATAAGCATGTGGTTAGGAAAAACAAGATATATATGTCAGGACCATTACTAGCTCAATCCAACAATATGGATGTGATGCTGAAAGAGCATGAACGAAAGATACAAGAGTTTTCAAGAAAAGCAATAATTGAGAAGGCAAGAGCAAGAAGTGACAAACTTAATGCACAGCCAAAGTAG 2079 0.4209 MGCICSKSSAVEDSPEGIENKLSPSSTRPSELSSLRLNSTKKVEAVSVKDKSLDSHSSDVKVSLVNKKDNGSVKLYDDENRMNRIEKPELAVFDHPSFGRVPKAVEGEQVAAGWPYWLSSVASEAINGWVPRSANTFERLHKIGQGTYSTVYKAHDLTNQKIVALKRVRFHNHDPESVKFMAREIHVLRRLDHPNVIKLEGLITSSMSHSLYLVFEYMEHDLTGLASNPAIKFSEPQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASHFDPDHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHLTIFKPANNYRRCVAEAFKEYPSPAVRLIATLLSVDPEHRGTAAAALKSEFFTSEPLACDPSSLPKYPPSKEIDTRLQDEANRREGAVGGKEQKVWSGVRQEKGPRAHVTAADPGMLSQQGELRNPHREPVSGFLLFPPNKHSEDVKETGNNISGRPRKRPSRSGPLVPGYRWVKSGKEVDDGDPVSNRMNQSKLYGLTASRPMSSQDAEEKPVQLHHGKPIEVRKSVESTSGSDSRRQDQRRIDDLTQIESGRVPSEKLTPVFQDKHVVRKNKIYMSGPLLAQSNNMDVMLKEHERKIQEFSRKAIIEKARARSDKLNAQPK* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0470 692 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Lan13g0470 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lan13g0470 692 MobiDBLite consensus disorder prediction 452 478 - -
Lan13g0470 692 MobiDBLite consensus disorder prediction 505 615 - -
Lan13g0470 692 MobiDBLite consensus disorder prediction 19 36 - -
Lan13g0470 692 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Lan13g0470 692 Gene3D Transferase(Phosphotransferase) domain 1 220 458 - -
Lan13g0470 692 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0470 692 CDD STKc_CDK9_like 137 421 - -
Lan13g0470 692 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Lan13g0470 692 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0470 692 PANTHER CYCLIN-DEPENDENT KINASE 1 679 - -
Lan13g0470 692 MobiDBLite consensus disorder prediction 1 36 - -
Lan13g0470 692 Coils Coil 661 681 - -
Lan13g0470 692 MobiDBLite consensus disorder prediction 452 470 - -
Lan13g0470 692 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0470 692 MobiDBLite consensus disorder prediction 555 577 - -
Lan13g0470 692 MobiDBLite consensus disorder prediction 580 615 - -
Lan13g0470 692 PANTHER CELL DIVISION PROTEIN KINASE 1 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0470 Lan-Chr13 3458172 3465074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0470 129 464 Core Cell Cycle Gene Families AT5G10270 48.433 2.87e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan13g0470 Pkinase 1.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0470 - - gmx:100807590 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1485 8 21942137 21949391 Lan13g0470 13 3458172 3465074 LSH