Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0468 ATGTCACTACACGCTTTCAAGGAAAGTCTAAAACCTTGCAGCACAACCCAACAACCACCATCCTCCAATTCATTTCTTCTCGATTCCCATTTCCCAACTCAAATCCCTAGAATACCCCCAAAATCCTCTCTTTCTCAGCAGATTCGCCGCCTTCAGGATTCCCCTCTTTCAATTTCTCCACCGCCACGGCCTCAGAGGGACGCGAAATGTAACAATGATGAAGAAGAAGATGAAGGAAATTTGGTGGTAAAGAAAGCAAATTTGGGCCCACCTAAACTAACCCCATTTCAATTTGATCACACTGGACCCTTTCAGCCTTTACTTTTGTCTTCACATGGAGAAATTCCGGTTACCCAGGTTCCTTCATCTATTAACTGTAGACTGCTTGAACATCAAAGAGTGGGAGTGAAGTTTCTGTATGGTTTGTACAAGAACAATCATGGAGGCATCCTTGGCGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGATGGGGAGTCTATGCTCAGTGGAAATTGGGAAAATAAGAGAGACCCTGTATTAATAATTTGTCCGACTTCTGTTATTCATAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTACAAACCGGGATCTGATATATGATAAATTGCAAGCAGATGGAGTGGAGATACTTATTACCAGTTTTGACACTTTCAGGATTCATGGTAGTTCGTTGTTAGATATCAAATGGAACGTTGTGATTGCTGATGAGGCTCACCGCCTTAAGAATGAGAAATCAAAACTCTACAAAGCATGTTTAGAAATTAAAACCCCAAGACGCTATGGTCTTACTGGGACTGTAATGCAGAATAAGATCATGGAATTGTTTAATATCTTTGACTGGGTTGCACCCGGATCCCTTGGAAGCCGGGAACACTTTCGTGATTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCAAGTGCTCCTGATAGATTTGTTAAAATTGCTGATGAGAGAAAACAACACCTTGTGGCAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATGTGCAAAAACGTGTTTACACCAGAATGTTGCAACTTCCTGAAATTCAATGCCTTATAAATAAGGACATGGATTGTAGCTGTGGTAGCCCTCTTAAACAAGTTGAATGTTGTAAGAGGATAGTACCAGATGGAATTATTTGGGCTTACCTTCACAAAGATAACCCTGATGGTTGTGATTCATGTCCATTTTGCCTTGTCCTGCCATGCCTTGTCAAGCTCCAGCAGATAAGCAATCACCTGGAGCTGATTAAGCCAAACCCTAAAGATGATCCTGACAAACAAAATAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAACACCCAGAATGAAAGTTTCATGGGTCTAAGTGATGTGAAGCATTGTGGCAAAATGCGAGCACTTGAAAAATTATTGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAGTTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTTGTTGATGATTTCAACAAGAGTCCAAGCAAACAAGTTTTTTTGATATCAACTCGTGCTGGTGGGCTTGGACTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAAGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTTTTCTTGCAGCCGGTTCACTTGAAGAACTTGTTTATACTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTTTCTGGAAATATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTCCGAGATTTATCTGATAAGCTATTTACTAGTGAGATCATTGAAATGCATGAGGTACATAAAACAGAAAAACAGGGAAGTATAAATCTGTCAGAAGAAACATGTTCATTAGTATCAGAGTCTGAAACCAGGTTATGTACTCAACCTGTGAGGGCTGCTACAAGTAATCCAGAACTTGAAGATCTTGGCATTGTGTATGCTCATCGAAATGAAGACGTTGTCAACTTCGGACCTGGGACTCAAGAGAAGATAGATACCGGCATCTCTTCAGGTGATAGCCTAAGCATGCCAAACATCTCTTCAATTCCCCAAAGGAAGAAACCAGATTGTGTACCTAAAAAGCAGAAAGTTACTTTGATTGATGAAAGGAAGAGAACCCAATATAGGTACATTGCCCAGTTTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCTGCAACTCCATTGGAGAGAGAAAAGGTGCTTCTAGACTACAAGAAGAAAAAGAAGATTCTCAATGGTTGA 2589 0.4106 MSLHAFKESLKPCSTTQQPPSSNSFLLDSHFPTQIPRIPPKSSLSQQIRRLQDSPLSISPPPRPQRDAKCNNDEEEDEGNLVVKKANLGPPKLTPFQFDHTGPFQPLLLSSHGEIPVTQVPSSINCRLLEHQRVGVKFLYGLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKDGESMLSGNWENKRDPVLIICPTSVIHNWESEFSKWSNFSVSIYHGTNRDLIYDKLQADGVEILITSFDTFRIHGSSLLDIKWNVVIADEAHRLKNEKSKLYKACLEIKTPRRYGLTGTVMQNKIMELFNIFDWVAPGSLGSREHFRDFYDEPLKHGQRSSAPDRFVKIADERKQHLVAVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYTRMLQLPEIQCLINKDMDCSCGSPLKQVECCKRIVPDGIIWAYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQNKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNKSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRFLAAGSLEELVYTRQVYKQQLSNIAVSGNMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIEMHEVHKTEKQGSINLSEETCSLVSESETRLCTQPVRAATSNPELEDLGIVYAHRNEDVVNFGPGTQEKIDTGISSGDSLSMPNISSIPQRKKPDCVPKKQKVTLIDERKRTQYRYIAQFMGMGELAFSKWLLSATPLEREKVLLDYKKKKKILNG* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0468 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 361 IPR027417 -
Lan13g0468 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 673 IPR001650 -
Lan13g0468 862 Pfam Helicase conserved C-terminal domain 517 629 IPR001650 -
Lan13g0468 862 Pfam SNF2-related domain 145 402 IPR000330 GO:0005524|GO:0140658
Lan13g0468 862 MobiDBLite consensus disorder prediction 1 79 - -
Lan13g0468 862 Gene3D - 108 360 IPR038718 -
Lan13g0468 862 MobiDBLite consensus disorder prediction 778 800 - -
Lan13g0468 862 PANTHER SNF2/RAD54 FAMILY MEMBER 62 799 - -
Lan13g0468 862 SMART helicmild6 546 629 IPR001650 -
Lan13g0468 862 MobiDBLite consensus disorder prediction 778 794 - -
Lan13g0468 862 MobiDBLite consensus disorder prediction 9 54 - -
Lan13g0468 862 Gene3D - 373 724 IPR027417 -
Lan13g0468 862 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 62 799 - -
Lan13g0468 862 CDD SF2_C_SNF 511 640 - -
Lan13g0468 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 311 IPR014001 -
Lan13g0468 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 682 IPR027417 -
Lan13g0468 862 SMART ultradead3 124 319 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0468 Lan-Chr13 3441884 3447435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0468 148 659 RAD5 or RAD16-like Gene Family AT1G02670 25.847 1.64e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan13g0468 SNF2_N 2.5e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0468 K20098 - gmx:100781003 1380.54