Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0467 ATGGTGTGTTTGGGTTCTGAAATGGTTGAAAGATTGAAACTTTGGTTGGTTAAGTGGAGGATTGCATTTGGGTGTTGTGTTTTTCTGTTGTTTCTTAGTCCAGTAATGGGTTTGAGACCTTTGAGGGACAAAACTGGTTCAATGGGGGATGAGTGGCTTTTTTCAAGAAGAGATGAAAGTGACTCAGGTCCATTTTCCGAATGGAACATAACCGGAACATATAGAGGGAATTGGAAATTTCTCGATACCACAAATGGCTCATCCAAATTTCCAGACATCAGAAAAACAAATGGGAATTCTGTCATTGAGTTGGCTAGTACTCCCACAAAGATTACTGGTGTTCATTATGTGCAGGGGGTAGTTTTGTTCCATGATGTGTTTGACAAAGAATACAATGTTGGTGGTTCCCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGGCAGCTTCGAATGATAACCAGCAGTGGAAAAGAGGGAGGGTTGAATCAGGGTGATGATTATATTTTATCTAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAAGTATTGCAAGAATCTTCACGAGATAGGATGCGGAGAAGAAAATCTTCTCCATTTTATGATATGGACAAACATTGTAATGTTGAAATTGCTGCACAGGTTTCACGCTTGCCATCATCAAAACATGGAGGGAGGCGTGATTCTTTTCACTTGGAGGGGTTAATGGAGAGCCCATCGGTGGATGATGATGGAGAGTGCTTCTCTCCTTTGCAGTTAAATGCATCATCTGTTAACGTGGAAGCTTACTATAGTAAAGCAGTGAACTACACGTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAGATGGAGCACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATACTAATGGTTGGTCAGCAAGCTATAATTGATGCTTATCTTTGCCTTTTACATCTCACTGCAGGAATAGTAGTTGAATCATTGTTTAACGCCTTTGCAACTGCTGCATTCTTTAAATTTGTGGTTTTCTCAATATTTGAGATGAGATATATTCTTGTCGTCTGGAAAGCAAGTAGGCCTTTGAGTAACGGGGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGCTTTATACAGGCGCTTATCTGGGATCCTCTTCGCCGGCATTCTGCTCATGTATGAATTCCATTATTATTTGAAACCTATTCTTCTTCTTGTATACTCCTTCTGGATACCTCAGATAATCACCAATGTTGTTCGTGATTCACGCAAGCCATTGCATCCTCATTATATCATAGGCATGACTGTTACTCGGCTAGCAATACCATTATATATTTTCTGTTGTCCGGACAACTTCATGCGGATAGAACCAGACCACAGGTGGTGTGTCTATCTGACTGTATTTATTGGACTTCAAGCTGCAATTCTTCTACTTCAGCACTACCTTGGGTCACGTTGCTTCATTCCTCACCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGCTCAAGATACAAGTCATGTCGCAGATTGTGTAATTTGCATGACAACCATTGATCTTAGTCATCCATCTAATGATTGCATGGTGACACCATGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGTCGGCGCCCGCTTCCGCCGGCCTGA 1704 0.4131 MVCLGSEMVERLKLWLVKWRIAFGCCVFLLFLSPVMGLRPLRDKTGSMGDEWLFSRRDESDSGPFSEWNITGTYRGNWKFLDTTNGSSKFPDIRKTNGNSVIELASTPTKITGVHYVQGVVLFHDVFDKEYNVGGSQIRIEGVYIWPFRQLRMITSSGKEGGLNQGDDYILSNPYHLLGVFSSQVLQESSRDRMRRRKSSPFYDMDKHCNVEIAAQVSRLPSSKHGGRRDSFHLEGLMESPSVDDDGECFSPLQLNASSVNVEAYYSKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMVGQQAIIDAYLCLLHLTAGIVVESLFNAFATAAFFKFVVFSIFEMRYILVVWKASRPLSNGEGWETMRRELSALYRRLSGILFAGILLMYEFHYYLKPILLLVYSFWIPQIITNVVRDSRKPLHPHYIIGMTVTRLAIPLYIFCCPDNFMRIEPDHRWCVYLTVFIGLQAAILLLQHYLGSRCFIPHQILPEKYSYYRRFAQDTSHVADCVICMTTIDLSHPSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0467 567 SMART ringv_2 516 561 IPR011016 GO:0008270
Lan13g0467 567 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 17 567 - -
Lan13g0467 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 567 IPR013083 -
Lan13g0467 567 SUPERFAMILY RING/U-box 516 566 - -
Lan13g0467 567 Pfam Ring finger domain 516 561 IPR001841 -
Lan13g0467 567 PANTHER RING ZINC FINGER PROTEIN 17 567 - -
Lan13g0467 567 SMART ring_2 517 560 IPR001841 -
Lan13g0467 567 ProSiteProfiles Zinc finger RING-type profile. 517 561 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0467 Lan-Chr13 3430196 3438812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0467 517 564 C3H Transcription Factor Family AT4G12190 37.500 9.34e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0467 K23788 - gmx:100802452 949.503