Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0466 ATGAGCATTGTGTGTGCTGAGCAACACAAGTTTCAATCCTCCCACCAACTTTTATCCCTTAAGAAATCCCTCAGGGACATTGACATCCCACCAAGGAAGCGCCTCCCTCGCCGTGCCACCATCACACATGACGGCGCTGCCGACATGTTTTCTGATGAGACCCTTTTCCAAAAGTACCTTCCTCACAACAACATGAACATGGTTGATGAATCTGATGACGATTCTGACCCTTACTCGTCGGATCATTTCCGCATGTACGAGTTCAAGGTGCGGAAGTGCAGTCGCAGCCGCAGCCATGACTGGACTGACTGCCCTTTTGCTCACCCCGGCGAGAAGGCTCGACGACGGGACCCCAGACGGTACTACTATTCTAGTACCGTCTGTCCTGAGTATCGCCGTGGCTGCGGGTCATGCAGCCACGGCGACACATGTGAGTTCTCTCACGGGGTTTTTGAGTGCTGGTTGCACCCTGCTAGGTATAGAACAGAAGCTTGCAAAGATGGCAAGAATTGCAAGCGAAAAGTGTGCTTCTTTGCACACACACCTCGCCAACTTAGGGTTCTACCCATAAATTCACATCCTACTTCAAATGAAATCATTAACTCATGCAACAATAATAACAAGGGCGAGTTCTTGAACACTTCAGACATTAAACACTCTTGTTTATTTTGTCATTGTAATTCTTGTGGTTCTACTTGTTCACCAACTTCTACTTTGTTTGGCATGTCTCATTTTTATTCTCCACCAATGTCACCATCTTCTTCTCCTGCAAATGGGGTCTCATCCATGTCTAGGTTTGTAGGATCTGAGAAAAACCATCATGATAGTGTTGGTGTGATTAGTTATAAAGACATGCTCAATGAGCTTATGTGTTCATTGAAGGGTTTCAGTGTTGCTGATACAAATTCTAATTATAATTCTCATCTTTCTTCTTCTTCTTCTTCCAAAGTACATAAGAAGAATTTGAATTGGCTTGATGCTTCCTTCAACTGTGAGGATCAGCAGCAACGTTTTGTTCTTTCTCCTTCTCCTACAACTGAAAGCTTCTCATCCAACGGTAGATATTCAACCAGCAACTTTTATAAGAATGTGGCAAAGGTTGTTGATGATGTAAATGACCCGGATCTGGGGTGGGTGAATGAATTGCTCATGTAG 1155 0.445 MSIVCAEQHKFQSSHQLLSLKKSLRDIDIPPRKRLPRRATITHDGAADMFSDETLFQKYLPHNNMNMVDESDDDSDPYSSDHFRMYEFKVRKCSRSRSHDWTDCPFAHPGEKARRRDPRRYYYSSTVCPEYRRGCGSCSHGDTCEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRVLPINSHPTSNEIINSCNNNNKGEFLNTSDIKHSCLFCHCNSCGSTCSPTSTLFGMSHFYSPPMSPSSSPANGVSSMSRFVGSEKNHHDSVGVISYKDMLNELMCSLKGFSVADTNSNYNSHLSSSSSSKVHKKNLNWLDASFNCEDQQQRFVLSPSPTTESFSSNGRYSTSNFYKNVAKVVDDVNDPDLGWVNELLM* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0466 384 PANTHER UNKEMPT FAMILY MEMBER 26 383 IPR045234 -
Lan13g0466 384 ProSiteProfiles Zinc finger C3H1-type profile. 122 151 IPR000571 GO:0046872
Lan13g0466 384 Gene3D - 118 189 - -
Lan13g0466 384 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 383 - -
Lan13g0466 384 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Lan13g0466 384 SMART c3hfinal6 122 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0466 Lan-Chr13 3424528 3426028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0466 72 188 C2H2 Transcription Factor Family AT5G12850 62.393 2.57e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan13g0466 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0466 K23047 - pvu:PHAVU_011G125300g 394.815