Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0458 ATGCTTGCAGTGTCACCTCTAAGGAGCATCGATGAAAACCAAAGAGAGATTGAGATTTTTTCGATGGGAACCTCATCGGACGTTGACTTTGGTGACCTTTCAGATGGGAACTTATTGGAAAACATCAACTTCGATGATATCTTCGTTGGCATCAACGTCGACGGTGATATCTTGCCGGATTTGGAGATGGACCCTTGCATGTTTGCTGAGTTCTCCATTAGCGGCGGCGAGGATTCGGAGATAACCTCATCGGTTGAAAACACCAAGGTTGATAGCTATCAGAATAGTACTATAAATATTACATCAAAGAAACTAGAAGATGAAGAAAAAACAACTTCTTCAGCTTCAGGTCAAGGTGAGGAGATAGTGAGCAAAAGAGATGAATCTGTGGTGGTGAATAAGTCCTCAAATGATGGTGTAAAAGGGAAGAAATCATCATCGAAATCAAAGAATAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACACCAGATTTGCACAGGCGATTCGTGCAAGCAGTGGAACAACTAGGAGTAGATAAGGCAGTTCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATAGATCACATAGGAAACATATGCTAGCTCGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGACATTTATATGGTGCAACTGGCGCATGTAGAGGAGAAGGGAAGAGTGAAGTGAGCCCATGGGTTGCACCAACTATGGGTTTCCCTCCCATGAACCCAATGCCCCATTTTAGACCCTTACATGTATGGGGGCATCCCCCTATGGACCAGTCCTTTATGCACATGTGGCCTAAACATCTTCCACAGTCGCCATCACCGCCACTGCCACCGCGCCCATGGACACCTCCTCCACCACCTCCAGACCCTTCATTTTGGCACGTTCAGCACCAGCGGGCTCCAAACACAGTGACCCAAGGAACACCATATTTCCCACAACCTCTGACAAGAACGATTTTTGGTTCTCCGCGTGTCCCTGCCATAGCACCTCATCTGTACAAAGCAGATCCCGGAATTGGTGTCACTGGCCCCTCTCTACTCTTCGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATAGGAGATGTTATAACAAAACCATGGCTACCACTGCCTCTTGGACTAAAAGCTCCGGCACTTGATAGTGTGTTAGGTGAATTACAGAGACAAGGAGTTCCAAATATTCCACCACCTTCTTCTTGA 1269 0.4618 MLAVSPLRSIDENQREIEIFSMGTSSDVDFGDLSDGNLLENINFDDIFVGINVDGDILPDLEMDPCMFAEFSISGGEDSEITSSVENTKVDSYQNSTINITSKKLEDEEKTTSSASGQGEEIVSKRDESVVVNKSSNDGVKGKKSSSKSKNNPQGKRKVKVDWTPDLHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHMLAREAEAASWSQRRHLYGATGACRGEGKSEVSPWVAPTMGFPPMNPMPHFRPLHVWGHPPMDQSFMHMWPKHLPQSPSPPLPPRPWTPPPPPPDPSFWHVQHQRAPNTVTQGTPYFPQPLTRTIFGSPRVPAIAPHLYKADPGIGVTGPSLLFDFHPSKESIDAAIGDVITKPWLPLPLGLKAPALDSVLGELQRQGVPNIPPPSS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0458 422 MobiDBLite consensus disorder prediction 289 311 - -
Lan13g0458 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 158 212 IPR006447 GO:0003677
Lan13g0458 422 MobiDBLite consensus disorder prediction 286 311 - -
Lan13g0458 422 SUPERFAMILY Homeodomain-like 156 215 IPR009057 -
Lan13g0458 422 Gene3D - 155 216 - -
Lan13g0458 422 MobiDBLite consensus disorder prediction 104 161 - -
Lan13g0458 422 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 421 - -
Lan13g0458 422 MobiDBLite consensus disorder prediction 133 149 - -
Lan13g0458 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 214 IPR017930 -
Lan13g0458 422 Pfam Myb-like DNA-binding domain 161 210 IPR001005 -
Lan13g0458 422 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 421 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0458 Lan-Chr13 3374883 3379866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0458 1 294 G2-like Transcription Factor Family AT5G44190 45.752 1.15e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan13g0458 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0458 - - gmx:100775671 499.204