Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0454 ATGATGCTAGAAAAGATGGATGATGGAGAAGTTTCAAATGGTTTCCCTCTTAACCCAACAACTGGTTCATCTAATAATTCTGATCCTGTTTTGAAGAGGAAGAGAAACCTACCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACACTAATGGCAACGAACAGATTCTTATGTGAAACATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTTCATAGACGTGGACACAACCTACCTTGGAAGCTTAAGCAGAGAACAAGCAAAGAAGTGAGGAAGCGAGTTTATGTGTGCCCAGAGAAAACTTGTGTCCACCATAACCCTGCAAGAGCTTTGGGAGACTTAACTGGGATAAAAAAACACTTTTGCAGAAAGCATGGGGAGAAGAAATGGAAGTGTGATAAGTGCTCAAAGTGTTATGCAGTTCAGTCTGATTGGAAAGCACACTCAAAAACTTGTGGTACTAAAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATTACTCATAGGGCTTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAAGCATAAGCAACTCACTAGGCCCGAACTTTAGTTACAACATTATGGGAACTCCCCAAGGCCCTAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCATTGATCATGAAACTAGTAATCAAACCAGTAGAGGGCTATCCCTTTGGATGGACCAACTATCTCATCAGGCTCATGAAACAAAGGTCAATGAAAATATTCATCAACTTGGGTCAGCTCCAAACTCAGGATCAGCAATATATGGTGAAAACCCAGAATTTAGTCAATGCTCAAATAATCATTCACCCTCTAATAATTATCATCTAAATTGGGTTTTTGGAACTAAGCCTTCCTCTAATAGTACCCTTGAGCTTATAACTAGCACTACTACTTCACTTCCACTAGGCAATATTATTAAGGATGCTACATGTACAAGCCAACTTATAAGTGTCCCTTCCTTGTATAGCTCCCAACACCAATCCCACCAAACATCCTCAGCAACAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGTGCAACCTCAACTACTGATCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAACAATCAAGGTCAAGATGGGAATAAGATCTTCCAGATGTATGGTTCAAGTTCAGTACCTACTAGTTTTGGCAGTGAGGCAGAAAACTCAGCATGTGACTTGTCACAAATGCACCCTGCAAAACGTAGACATGTACAGAAGGAGGAAGGTCCTGGTGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGGGTGCAAACCCTATGCCACCCTTCATCAATTAACGGATGGATGTGA 1419 0.4151 MMLEKMDDGEVSNGFPLNPTTGSSNNSDPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHSKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALAEETARVNATSSISNSLGPNFSYNIMGTPQGPNMATHFSSIFKPVSSIDHETSNQTSRGLSLWMDQLSHQAHETKVNENIHQLGSAPNSGSAIYGENPEFSQCSNNHSPSNNYHLNWVFGTKPSSNSTLELITSTTTSLPLGNIIKDATCTSQLISVPSLYSSQHQSHQTSSATNMSATALLQKAAQIGATSTTDPSFLGSLGLKCSNNQGQDGNKIFQMYGSSSVPTSFGSEAENSACDLSQMHPAKRRHVQKEEGPGGGQTRDFLGVGVQTLCHPSSINGWM* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0454 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 469 - -
Lan13g0454 472 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lan13g0454 472 Gene3D Classic Zinc Finger 115 195 - -
Lan13g0454 472 MobiDBLite consensus disorder prediction 433 453 - -
Lan13g0454 472 MobiDBLite consensus disorder prediction 14 31 - -
Lan13g0454 472 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lan13g0454 472 MobiDBLite consensus disorder prediction 1 43 - -
Lan13g0454 472 PANTHER F-BOX ASSOCIATED PROTEIN 8 469 - -
Lan13g0454 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lan13g0454 472 Gene3D Classic Zinc Finger 40 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0454 Lan-Chr13 3341671 3344675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0454 29 472 IDZ Gene Family AT1G03840 52.716 8.14e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g0454 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0454 K25870 - qsu:112011855 622.854