Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0452 ATGGACGTTGATTCCTCTATGGCGCTGGAGTCCGATCACGACCCGGCGGTGCTGAACCATGCTGCTTCAGCGGAGAGGGAGAGCCAAGGGGAGTCGCCTTCTGGCGGAGATCCTCCGCCGACGCCGCATTTTCAACAGCAACAGCAGCAGCAGATTGCGGGGGGTGCTCAGGTGCATCAAAGTCCGGTTGTTGGTCCTAGGCTGGCGCCAAATTACTCTGTAGTGGATGTGATTTTGGAGAAGAAAGAGGATGGGCCGGGGCCACGGTGTGGCCACACGTTGACTGCTGTGGCGGCTGTGGGAGAAGAAGGCACACCGGGGTACATTGGTCCTAGGTTGATTTTGTTTGGTGGTGCCACTGCGCTTGAAGGGAACTCTGCTGCTTCAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGACGTCCACTGTTATGATGTCTTGAGTAATAAATGGTCTAGGATAACTCCCTTTGGAGAGGCCCCAACTCCAAGAGCTGCACATGTGGCAACTGCTGTGGGAACGATGGTAGTTATTCAGGGTGGTATCGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTTACTCAGCAACGGCCACGATGGCATAGAGTTGGCGTTCCAGGCCCTGGACCAGGGCCACGTTATGGACATGTAATGGCTTTGGTAGGGCAGAGATATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCTCGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGAGATGCCAATAGTGTTCCAATGGCAAGTGCATATGGGCTTGCTAAGCATAGAGATGGCCGTTGGGAATGGGCAATTGCTCCTGGTGTCTCACCATCTCCGAGATATCAGCATGCAGCGGTATTTGTTAATGCACGACTCCATGTGTCCGGTGGGGCTCTTGGTGGAGGACGGATGGTAGAAGACTCATCAAGTATTGCAGTGTTAGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCCGCAGTTGAGTTGACAAGGCGCTGTAGGCATGCTGCTGCTGCTGTTGGCGACTTAATTTTTATTTATGGTGGTTTACGTGGTGGAGTCTTGTTGGATGACCTACTTGTTGCTGAGGATCTTGCTGCTGCTGAAACAACTGCTGCTGCTTCACATGCTGCTGCTGCAGCAGCTGCTGCTTCTAATGTACAAGTGGGACGACTACCTGGACAATATGGATTTGCTGATGATAGGACAGGGCAAATAATGCCTGATGCAGCTGCTGATGGTGCAGTTGTTTTGGGCAATCCAGTTGCTCCCCCTGTAAATGGTGATATGCATACTGATATCAGCACTGAAAATGCAATGCTTCAGGGATCTAGGCGAACTAGCAAAGGTGTTGAGTATCTGGTTGAAGCATCAGCTGCTGAAGCTGAAGCTATCAGTGCCACATTGGCTGCTGCTAAGGCACGACAAGAGAATGGAGAAGTTGAGTTGCCTGACAGAGACCGTGGAGCTGAGGCTACCCCTAGTGGGAAACAAATCTCTTCCTTGATTAAGACTGATTCTGCAGGGCCAAATAACATCACTTCTGGTGGAGTTAGGCTGCATCACCGAGCTGTAGTTGTTGCTGCAGAGAGTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCGATTGATCAGTTTGAAAATGAAGGCAGACGGGTCAGTTATGGGACTCCAGAAAATGCAACCGCCGCTCGAAAGTTATTAGATCGGCAGATGTCTATCAATAGTGTCCCAAAGAAGATAATAGCACATCTCTTAAAGCCTCGTGGCTGGAAACCACCAGTTCGAAGGCAATTTTTCCTAGACTGCAATGAAATTGCGGATCTTTGTGATACTACAGAGCGGATATTTTCAACTGAACCTAGCGTCATACAACTTAGGGCACCTATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTGTTTGATGAGTATGGTGCACCATCGACTGCTGGTGACATAGCATATATTGATTATCTATTCCTAGGAGATTATGTTGATAGAGGCCAACACAGCCTGGAAACTATAAGCCTTCTGCTTGCTCTGAAGGTTGAATATCCAAACAACGTACATTTAATACGTGGAAACCATGAAGCTGCTGACATTAATGCCCTTTTTGGTTTCCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGGCATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTTTGGCAGCTCTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCTATAAATCATGTGGAACAGATTGAAAATATTCAGCGACCAATTACTATGGATGCAGGATCCATTGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGATTGCGGCCAAATGCAAGAGGTCCAGGTTTAGTTACTTTTGGGCCTGATCGTGTCATGGAATTTTGCAACAATAATGATCTTCAGCTGATTGTTCGGGCACACGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAAGGACATTTGATCACACTTTTCTCAGCTACAAACTACTGTGGTACCGCAAATAATGCTGGGGCGATATTAGTTTTGGGTAGAGATCTTGTTGTTGTTCCTAAACTGATTCATCCATTACCACCTGCAATTTCTTCAACAGAAACATCACCAGAACGTCATATTGAAGATACGTGGATGCAGGAGTTGAATGCTAACAGACCCGCAACACCAACTAGAGGCCGTCCTCAAGTAACAAACGACCGAGGTTCACTTGCTTGGATATAG 3015 0.4813 MDVDSSMALESDHDPAVLNHAASAERESQGESPSGGDPPPTPHFQQQQQQQIAGGAQVHQSPVVGPRLAPNYSVVDVILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLSNKWSRITPFGEAPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPMASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSIAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTAAASHAAAAAAAASNVQVGRLPGQYGFADDRTGQIMPDAAADGAVVLGNPVAPPVNGDMHTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGEVELPDRDRGAEATPSGKQISSLIKTDSAGPNNITSGGVRLHHRAVVVAAESGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKIIAHLLKPRGWKPPVRRQFFLDCNEIADLCDTTERIFSTEPSVIQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMDAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSTETSPERHIEDTWMQELNANRPATPTRGRPQVTNDRGSLAWI* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0452 1004 PIRSF STPPP_BSU1 38 1004 IPR012391 GO:0004721|GO:0009742
Lan13g0452 1004 Pfam Kelch motif 330 376 IPR011498 GO:0005515
Lan13g0452 1004 Gene3D - 70 196 IPR015915 GO:0005515
Lan13g0452 1004 SUPERFAMILY Metallo-dependent phosphatases 656 960 IPR029052 -
Lan13g0452 1004 SMART pp2a_7 673 957 IPR006186 GO:0016787
Lan13g0452 1004 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1004 - -
Lan13g0452 1004 Gene3D - 637 985 IPR029052 -
Lan13g0452 1004 MobiDBLite consensus disorder prediction 1 65 - -
Lan13g0452 1004 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1004 - -
Lan13g0452 1004 MobiDBLite consensus disorder prediction 549 563 - -
Lan13g0452 1004 Gene3D - 197 449 IPR015915 GO:0005515
Lan13g0452 1004 SUPERFAMILY Kelch motif 143 433 IPR015915 GO:0005515
Lan13g0452 1004 MobiDBLite consensus disorder prediction 547 587 - -
Lan13g0452 1004 ProSitePatterns Serine/threonine specific protein phosphatases signature. 770 775 IPR006186 GO:0016787
Lan13g0452 1004 MobiDBLite consensus disorder prediction 41 57 - -
Lan13g0452 1004 Pfam Calcineurin-like phosphoesterase 701 908 IPR004843 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 701 728 IPR006186 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 736 763 IPR006186 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 769 793 IPR006186 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 807 833 IPR006186 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 897 917 IPR006186 GO:0016787
Lan13g0452 1004 PRINTS Serine/threonine phosphatase family signature 919 935 IPR006186 GO:0016787
Lan13g0452 1004 Pfam Galactose oxidase, central domain 224 277 - -
Lan13g0452 1004 CDD MPP_Bsu1_C 653 955 IPR041758 -
Lan13g0452 1004 MobiDBLite consensus disorder prediction 982 1004 - -
Lan13g0452 1004 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0452 Lan-Chr13 3310389 3324950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0452 665 900 Calmodulin-binding Proteins AT5G63870 28.676 1.01e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0452 - - gmx:100790406 1756.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0400 7 2771627 2783326 Lan13g0452 13 3310389 3324950 LSH
Lan8g1573 8 22738615 22756862 Lan13g0452 13 3310389 3324950 LSH
Lan3g0014 3 162623 172853 Lan13g0452 13 3310389 3324950 PCT
Lan13g0452 13 3310389 3324950 Lan3g0014 3 162623 172853 PCT