Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0444 ATGTCGGACACAACGCCGCCACCCTACGCCGCCGCTAACCCGCCGGAGAAGATTATGCACGCAATGAAACGGAAACTTCCGTTTTCCTCATTGAAACCGCCGTTTGTCGCTGGCGGATATTATCATCGCTTTGCCCCTGACAGACGCCGAGATTTTGCCCAACCAGACGAGGTCATAGTCGTCAAATCTCGAAAATTGAAGCGGAAGAATGAAGTGGCTGATTTTGCAGGTGATTGTGGTGATAGGATGAATCCTGGATCTATTGATGCAGCTAATAGTCCTCTTCAGACACCTGTATCAGGAAAGATGGGGAAGGGTGGCAAGTCCTCTAGGCCTACAAAATGCAATAGATTTGGACCTCAAACCCCTGGATCAAATATTGGTTCTCCTTCAGGCAATAATCTCACACCTGCTGGTCCAAATCGTTATGACAGCTCTTTAGGTACATTGACAAAGAAATTCATCAATTTGATCAAACGCGCAGAGGATGGTATTCTTGATCTGAATAATGCTGCTGACACATTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAAGGACTGGATGGCTCAAGACCAGGGGAGGCTGAAGAGTGTTTTAGCAGTTTACAGGCAGAAGTTGAAAATCTTACAATGGAGGAGCGGCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGAGAACTTACTGAAGACAAACACAATGAGAAGTTGCTATTTGTCACCGAGGAAGATATAAAGAATTTGCCCTGTTTCCATAATGAAACCTTGATAGCAATTAAAGCTCCACAAGGCACCACTTTGGAGGTTCCTGATCCTCATGAGGCTGCTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGTCCAATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGGTTAATGTTGATATTGCACCCAAATTTCCATCCACTCTAGAATTGAACAACCAACAATCAACAGTGGCCGCAGAGGATAGAGGGAAAGGAACAGAAGTGCAGGGACAAGATGGTCACGATCCTAGTTCAGATTTTACTACCGCACAGGACTTCGTGAGTGGGATAATGAAGATTGTTCCTTCAGATGTTGATAATGATGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAGTTGAGTGGAATGAACTGGATAATACACTTCAAGAATATCATGCAACTCCTGAGCTTGCTGCCGCCGCAATTCATCCTCCAAATGCAAGTGAAGCCCCTTCGACATCTAACCCTACTGGAGATTGA 1383 0.4418 MSDTTPPPYAAANPPEKIMHAMKRKLPFSSLKPPFVAGGYYHRFAPDRRRDFAQPDEVIVVKSRKLKRKNEVADFAGDCGDRMNPGSIDAANSPLQTPVSGKMGKGGKSSRPTKCNRFGPQTPGSNIGSPSGNNLTPAGPNRYDSSLGTLTKKFINLIKRAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDGSRPGEAEECFSSLQAEVENLTMEERRLDEQIREMQERLRELTEDKHNEKLLFVTEEDIKNLPCFHNETLIAIKAPQGTTLEVPDPHEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVDIAPKFPSTLELNNQQSTVAAEDRGKGTEVQGQDGHDPSSDFTTAQDFVSGIMKIVPSDVDNDADYWLLSDADVSITDMWRTESGVEWNELDNTLQEYHATPELAAAAIHPPNASEAPSTSNPTGD* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0444 460 Coils Coil 220 261 - -
Lan13g0444 460 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Lan13g0444 460 Gene3D - 136 209 IPR036388 -
Lan13g0444 460 Gene3D - 215 324 - -
Lan13g0444 460 Coils Coil 158 178 - -
Lan13g0444 460 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Lan13g0444 460 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Lan13g0444 460 PANTHER TRANSCRIPTION FACTOR E2FB 20 435 - -
Lan13g0444 460 MobiDBLite consensus disorder prediction 114 142 - -
Lan13g0444 460 PANTHER TRANSCRIPTION FACTOR E2F 20 435 IPR015633 GO:0000978|GO:0006357
Lan13g0444 460 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Lan13g0444 460 MobiDBLite consensus disorder prediction 441 460 - -
Lan13g0444 460 SUPERFAMILY "Winged helix" DNA-binding domain 141 205 IPR036390 -
Lan13g0444 460 CDD E2F_DD 221 324 IPR032198 GO:0046983
Lan13g0444 460 MobiDBLite consensus disorder prediction 77 142 - -
Lan13g0444 460 MobiDBLite consensus disorder prediction 351 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0444 Lan-Chr13 3218227 3222901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0444 23 459 E2F-DP Transcription Factor Family AT5G22220 54.701 2.37e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan13g0444 E2F_CC-MB 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0444 K06620 - gmx:100819817 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0390 7 2644183 2648695 Lan13g0444 13 3218227 3222901 LSH
Lan8g1580 8 22856890 22863691 Lan13g0444 13 3218227 3222901 LSH