Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0434 ATGCCAATGGGAAAGGCAGATTCTTCACCTGTTCCTAAGCCATCTGATCCTGAAAAGCCAGCTGAATCTGATGAGCGGGTCAATTTTAATGATGCAAATGATTCTGAGGTAGAAATGGAAGAAGAAGTTGAATATGAAGAAGTAGAAGTAGAAGAGGAGGTTGAAGAAGAGGAGGAGGATCCAGAGGAGGAAGAGTATGAGGAGGAAGAGGTGGAGGAGGAAGAAGAAGAGGTTGAAGAAGTGGAAGAAGATGATGCCAAAGTGGAAGATGAGAATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTATTCCTCTTGATGCCTCAAATGAGGATTTGAAGGCTTTTTGTGCGCATATTGGGGAAGTTACAGAGGTTCGTATCATGAAAGGCAAGGATGCTTCTGAGAATAAGGGCTTCTGTTTTGTGACTTTTAGAAGTGTGGAGCTGGCTTCTAAAGCCATTGAGGAGCTGAACAATAAAGAATTTAAGGGTAAAAAAATAAAATGTTCCACAGCTCAAGCAAAACACCGCCTTTTTATTGGCAACGTTCCTAGAAGCTGGGACGAGGAGGATCTGAGGAAGGTTGTAACTGAAATTGGACCTGGTGTTACTTCTTTAGAACTAGTCAAGGATGTGAAGAACATAAAAAATAACCGTGGCTTTGCTTTTGTCGACTATTATAATAATGCATGTGCTGAATACTCAAGGCAGAAGATGATGAACCCATCATTTAAGCTAGGTGGCAATGCTCCAACAGTGAGCTGGGCTGACCCGAAAAATGCTGATTCTTCTGCTTCATCTCAGGTGAAAGCAGTATATGTGAAGAACTTGCCTAAGAATGTAACTCAAGAACAGTTGAAGAAGCTTTTTGAACATCATGGAAAAATCACAAAGGTGGTTCTTCCATCGGCAAAGTCTGGGCAGGAAAAGAACAGGATCGGTTTTGTTCATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTAAAAAACACTGAAACATATGAATTAGAAGGTCAAATTTTGGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAATACACAGAAGCCAGGGTTGCTTCCAAGCTATCCACCACAGGTTGGTGGTTATGGTTTGCTTGGGGGTCCCTATGGTGCGCTTGGAGCAGGATATGGTGCTCCAGTTCTTCAACAGCCCATGATGTATGGAACGGGTCCAACTCCTGCTGGAATGGGCATGATGCCTATGCTTCTGCCTGATGGTCGGATTGCATATGTCTTGCAACAACATCCGGGAATGCAGCCACACACACATGCACAAACCCCATCCTCACACCAGAGAGGTGGCAGGAGTGGTGGTAGTGGCAGCAGGAATAGTGGCAGTTCAAATAAGGGGAGGTACAACAATGACAGTGGCCAAGGGCGCAGATATCGCCCATATTAA 1473 0.4413 MPMGKADSSPVPKPSDPEKPAESDERVNFNDANDSEVEMEEEVEYEEVEVEEEVEEEEEDPEEEEYEEEEVEEEEEEVEEVEEDDAKVEDENEKKKHAELLSLPPHGSEVYIGGIPLDASNEDLKAFCAHIGEVTEVRIMKGKDASENKGFCFVTFRSVELASKAIEELNNKEFKGKKIKCSTAQAKHRLFIGNVPRSWDEEDLRKVVTEIGPGVTSLELVKDVKNIKNNRGFAFVDYYNNACAEYSRQKMMNPSFKLGGNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPSAKSGQEKNRIGFVHFAERSNAMKALKNTETYELEGQILECSLAKPQADQKSGGSNTQKPGLLPSYPPQVGGYGLLGGPYGALGAGYGAPVLQQPMMYGTGPTPAGMGMMPMLLPDGRIAYVLQQHPGMQPHTHAQTPSSHQRGGRSGGSGSRNSGSSNKGRYNNDSGQGRRYRPY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0434 490 SMART rrm1_1 109 182 IPR000504 GO:0003723
Lan13g0434 490 SMART rrm1_1 189 266 IPR000504 GO:0003723
Lan13g0434 490 SMART rrm1_1 283 356 IPR000504 GO:0003723
Lan13g0434 490 CDD RRM_SF 110 182 - -
Lan13g0434 490 MobiDBLite consensus disorder prediction 443 480 - -
Lan13g0434 490 SUPERFAMILY RNA-binding domain, RBD 275 387 IPR035979 GO:0003676
Lan13g0434 490 Gene3D - 29 188 IPR012677 -
Lan13g0434 490 Coils Coil 40 60 - -
Lan13g0434 490 MobiDBLite consensus disorder prediction 443 490 - -
Lan13g0434 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Lan13g0434 490 Gene3D - 271 388 IPR012677 -
Lan13g0434 490 SMART rrm2_1 109 182 IPR003954 GO:0003676
Lan13g0434 490 SMART rrm2_1 283 356 IPR003954 GO:0003676
Lan13g0434 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Lan13g0434 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Lan13g0434 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 351 IPR000504 GO:0003723
Lan13g0434 490 SUPERFAMILY RNA-binding domain, RBD 105 274 IPR035979 GO:0003676
Lan13g0434 490 Gene3D - 189 269 IPR012677 -
Lan13g0434 490 MobiDBLite consensus disorder prediction 34 87 - -
Lan13g0434 490 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 457 - -
Lan13g0434 490 Coils Coil 63 98 - -
Lan13g0434 490 PANTHER RNA RECOGNITION MOTIF 1 457 - -
Lan13g0434 490 MobiDBLite consensus disorder prediction 359 379 - -
Lan13g0434 490 MobiDBLite consensus disorder prediction 17 33 - -
Lan13g0434 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Lan13g0434 490 MobiDBLite consensus disorder prediction 1 98 - -
Lan13g0434 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Lan13g0434 490 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0434 Lan-Chr13 3142333 3148191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0434 110 445 Eukaryotic Initiation Factors Gene Family AT4G34110 25.205 2.21e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0434 K13161 - qsu:112027094 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1594 8 22931625 22937077 Lan13g0434 13 3142333 3148191 LSH