Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0429 ATGGGTTTGAGAGAATACAATAATATTGTAGAAGACAAGAATCTCTACCTTCATTCACCAACTTTCATTGAATGGCTAAAACCATTTAATTCCTCTCCTTCATATCTAACTCCCACAGTATCATCTTCAATGTCTTCTCCTTCTTCTGTGACTCAGAATGATCTTGTTCATGAAACTATCCAATTTTTTCCAATCTTAAAAGGAAAGCCCTCAAGAGATGAAGAACTAAAAAAGAAGGTTCCTGAGGTAAAAGAAGAAAAGGTGGAACAAATGACTGTGGCTTTGCATATTGGTTTGCCTAACACTACTAATGATATAATTGAGCATGATCATGATGAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAAGAGCCTTTGAAGGAAAAAATCTTCCATGGCAGCTCAGAGAGAAGGTTTTGGATACCAAGTCCAGCACAGATACTTGTTGGGCCGATGCAGTTTGCTTGCAACATATGCAGCAAGACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATATAGGAAAGGACCAGACTCACTGAGAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAAAACAGCATCAACCACCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACCCACTACAAAAGAAAGCATGGCACTAAACCATTCACGTGCAGAAAATGTTGCAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAATTGTGGCAAATTGTGGTACTGCTCTTGTGGATCTGACTTCAAGCATAAGAGGTCTCTTAAGGATCACGTTAGATCCTTTGGAAAGGGTCATTACCCACGTCCTAATTCTATTGAAGAATTATTGGAGGATGAGAAGGATTGCATTACTGGGTCTGATGAAGATCATGATGTTGCTCATAACATGATTATCTAA 972 0.3961 MGLREYNNIVEDKNLYLHSPTFIEWLKPFNSSPSYLTPTVSSSMSSPSSVTQNDLVHETIQFFPILKGKPSRDEELKKKVPEVKEEKVEQMTVALHIGLPNTTNDIIEHDHDEKKVFHVKEEEEEPLKEKIFHGSSERRFWIPSPAQILVGPMQFACNICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAQGCKNSINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCCKTFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVRSFGKGHYPRPNSIEELLEDEKDCITGSDEDHDVAHNMII* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0429 323 SUPERFAMILY beta-beta-alpha zinc fingers 146 178 IPR036236 -
Lan13g0429 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Lan13g0429 323 SMART c2h2final6 239 259 IPR013087 -
Lan13g0429 323 SMART c2h2final6 155 177 IPR013087 -
Lan13g0429 323 SMART c2h2final6 202 234 IPR013087 -
Lan13g0429 323 PANTHER ZINC FINGER PROTEIN WIP2 1 316 IPR043584 GO:0003700|GO:0010468
Lan13g0429 323 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 316 - -
Lan13g0429 323 Gene3D Classic Zinc Finger 152 177 - -
Lan13g0429 323 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0429 Lan-Chr13 3088865 3091822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0429 8 309 C2H2 Transcription Factor Family AT1G08290 53.097 4.10e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g0429 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0429 - - gmx:100802773 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0359 7 2461450 2465061 Lan13g0429 13 3088865 3091822 LSH
Lan8g1603 8 22989381 22992357 Lan13g0429 13 3088865 3091822 LSH