Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0416 ATGGAAACGCCGGTTGCTAGATCGAGGGGAAGGCCACGTAAGCGGAGAAGAAAGGACGAAGAAAAACCGGTTGCAAAATCAAAGAGGCAAGTTGTGGAGACAAAACCGATAGCATTGGTTGGGCGATTCGTGCAGAAAAAGTTCCGGAGAAAACGAAATTTTCTCGGTAAGGTTGTGTATTATGAATGTGGATTGTATAGGGTTCATTATGAGGGTGGAGATAGTGAGGATTTAGATAGTGGTGAGGTTCGTGCAATCCTTGTTAATGATAATGATTTCGATGCTGGTTTGACTAGAAGGAAGGTTAAATTAGAGGAATTAGTGTCACAGATTAGTGTAAAGGTCGCAGATGAGAAACATAAGGGTTCTGCTAATCAGAATAAAGAGGAATTGAAGATTGATGCACCTGTTTCTTGTGAATTGAACAAGGAACAATATGATGATGAATCAGGAGATTTAAGTATGGGTTTAGGGGAAAAGGGTCCCGGCATTGAGGCTGAGACACTGCCTCTGCCACCACCACTGCAGTTGCCTCCTTCATCGGGAACTGTTGGAGTGCCGGATCAATATGTCTCACACCTGTTCGCCGTTTATGGATTCTTAAGATCATTCAGCACTTGCCTTTTTTTAACTCCCTTTACCCTGGATGACTTTGTTGGCGCCCTCAACTGCCAAGTTGCAAACACATTGTTTGACGCTATTCATGTCTCCCTTATGCGCACGTTAAAGCATCATCTTGAAACTGTTTCACCCGAGGGATCGGAGCTTGTGTCAAAATGCTTTAGGTGTAATGATTGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTTGCAATTCAGTATTTAATCATTAATGGATACACAAAAGGGCCTGAGTGGGACGGATTTTATGATGAAGTTTTTACCAGGGAGTATTATTTATTTCCTGTGAGTAGGAAACTAATGATATTGCAAATTCTTTGTGATGATGTTTTGGAATCTGAGGAGATAAAAGCTGAAATGAATATGCGCAAAGATTCGGAGGTAGGGGTAGATTATGATGCAGAAGATATCCCTCCTGTGGAAATAAGGCCGGGAAGAGTCCATCCAAGATATGCCAAGACTTCTTCTTGTGAGGATAAAGAATCAATGGAGTTTGCTTCAGTATCAAATGCTGTGAACCAAACTGGTAATTCTATTTCATATTTTAGAGATACTGAAAGCACTGAGGATGGTGAAGATCATAGAAATGGAGATGAATGTCGCCTCTGCGGTATGGATGGGATCCTGCTTTGTTGTGATGGGTGCCCTTCTGCTTACCATTCGAGATGTATTGGTGTGATGAAAATGTATATTCCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATTAACATGATTGAGCCAACAACTGTAAAGGGAACATCACTTAGAGGGGGTGAAATATTAGGAAAGGATTTGTATGGGCAACTCTTTGTGGGTACTTGCAACCACTTGCTGGTGCTCAATACCAATGATGATAGATTTGGGCTTCAATATTACAATCAGAATGACATTCCTAAAGTTCTCCAATTGCTTTATGAATCTATGCAGCATAGACCAATGTATTATGGTATTTGCATGGCAGCGTTACAATACTGGAATATTCCAGGAAGTGTGTTGCCTCTTTCTGCTTCAACTGGAAAAAATGTAAACTTGGTGATTAAAAAGGAAGAGACAGATTTCCATACTTCATTACTTCCTCCCTCAGATGAAGTCAATCATAAGCCTATTAATTTGGTGAAGGGAGAGGACCCTCTAGCCAACTCGAGTTTGAATCAAGGTGATATTGCTGTGTCATCTCTTGATATTTCATCAGTTACCACTCAAAGTCCTTCTCATGAAAGCCTTTGTAATGCTAGAAATAAAGAGTGCCCTATTGTGAATACAAAGCTTCCTTTGGAAACTAGTCATCAGTGTGCTATGAATCACCATCATTCTGTGGATAGTTTAATTGCAATAGATCATGCTAAGTACTCTTTGGTGAACAGCCACTACAATAATCTTGGCCATGCAAATGATATCGGGTTGCCCACAAATTTTTCAGTGCAAACCAAAGAAAGTACTCAAGTAGGTTTTGGAAAGTGTGAACACAATATTACTAATAATTTTGGGCACATGGGTTTCTCCTATAAACCTTTGTCATACATTAACTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGACCGTTCTTTCTTCAGAGGAGCCTAGGTCTGAGGGTCATGTATCAGACAATCAGAGGAAAACTACAGCTGCAATTGTTTATTTGCAAGCAAAAGCGTTCTCACTAACCGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCATGTGGAGGTTCCGAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTCAATCGGCAGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCATTAAAAGTGTTATGAAATTTGTTACTGGTTTTTCTGTTTTAAGAAGTGGAGAGGGAAATCTTCCTAGCATTGCGACATATATTATATACACACAGGAATGTTTACGTGGTTTATTTGTTGGGCCCTTCCAAAGAGCAAGCTACAGAAACCAATGGCGTAAGCAAGTTGAAGAAATCACAACATACCGTGCTCTCAAACCACTTTTACTTGAATTTGAGGAGAATATTCGCACAATTGCTTTTTGTGGGGATTGGGTTAAGCGGATGGATGATTGTTTGGTAGACTCTTCCATAATACAAAGTGCTGCATCTTCTCTTGGAACAACACAGAAACATGCACCAAGTGGTAGGCGTTACAAAAAGCGGTTAGCTATTGATGGAGCTAAAGTTGATGCAACCAAAGAAAGCTTTGTATGGTGGCGAGGAAGCAAATTCACCAAGTTTGTATTCCAGAAAGCAGTTTTGCCATTATACATGCTCAGAAAAGCAGCTCGCCAGGGTGGTCGGAGGAAAATTTCTGGTATTTTCTATACTGATGGCTCTGAAACCCCTAAAAGAAGCAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGAAATGCATCACAATTGGCACTTCAGGTAAGATATCTAGATTCTTACCTCAGATGGAATGATCTTATTCGTCAGGAACAGAACACCCAGGATGGGAAAGGTCAAGAACCTGAAGCTTCTACTTTCAGAAATTCAAATATATGTGATAAAAAGCTTGTAGAGGGAAAATGTTGTTATGGAGTGGTTTTTGGGAGCCAAAAGCATCTTTCTTCTCGGGTTATGAAAAATGTTGTTGAAATTGAGCAAGATTCGGGTGGAAAGGAAAAATATTGGTTTTCTGAAGCACACATTCCTTTACATTTGGTAAAAGAGTATGAAGAATGTAACACAAAAGTGCCATCTGGTGAAGGGTGCTTGAATTTCGTGTCTCACTTGCACAAAAGGCGGTTGAAGGCCAAGTGCAAGGACATATTTTCTTACCTTGCCTGCAAGAGAGACAACTTGGACATGTTCTCGTGTTCTGCATGTCATATGGGTGTTTCATTTAGGATTGCTTTCAAGTGCAATGCATGTCAAGGTTATTGTCATGAGGGCTGTTCTATAAGTTCAAAGGTCTGTAGAAATGGGAAACTTGAGTACTTGACCACATGCAATCATTGTCACCCTGCTAAGTTACTTGCTCTGAAAGAGACTAGTGATGGATCTCCAACTACTCCCTTGCTCTTACAAGGACGAGAAACTGGTTCTGTGATGGTTTTGAAGGGACCAAGACCTAAATGTTATGATCAAGCACTGAAATCTGCCAGGACAAAGGCCTGTTCTCCTGACATGAACCATGTGGGGCCTGTGTCAGTTTTGAGGGGAACAAGGTCTAAATGTGATGATCGAGCATTGACTTCTACTGGGACAAAAGATAGTCCTCCTGACAAGAAACAAGTTCTTTCTAATTCCACTTCCGCAGCAAAAAGCCGACACAGGAATAGTTCCTGGGGTATTATATGGAAAAAGAGAAACAATGAAATTGTTGAAAATTCAGCAGCAGACATTGATTTCAGGCTCAAAAACATACTTTTAAAGGGAGGTTCTGGCATGCCTCAAATTGAACCTGTTTGTCACTTGTGTCGTAAGGCATATAGATCTGATCTGATGTATATTTTCTGTCAGACATGCCAACATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAAATTTTGGATGTGTCGGGCTTCAAATGTTGCAAGTGCCGCAGGATAAAATCACCTGAGTGCCCCTACTCTGATGCGAAGCCTAAGACACAAGAGGGCAAAAAGTCCCGGTCACGCCCAATGGTTTCAAAGAAAGGGCATTTTGCATCAGATTCTGATTCTGGAACATTTTCTGACATGACAGAATGTGAACCTGCTACACCTGTCTTTCGTGTAGATGATGATCCTCTGCTCTTTTGTATTTCAAATGTAGAGCTGATTACAGAACCTAAGTTAGAAGTTGATGTTGACCGAAATACTGTCTCTGCATCAGGACCTCGGAAATTACCAGTGAGAAGGCAAGTTAAGCGTGAGGGGGATGACAATGGTTCCTTCTGGGGTAAATCTTTGCATGCTAAATGCTCAACACAAACTGAATCAGGCAATCTGTCCAACCCTGTAGGGAGGTCATCAACTCCTTTAGAATATGACCCTGGTGTTCGCTTTGACAGCAATCTTCTGAATGATTCTGAAAGTTTCAATTATGCATCAATGGATTTTGAGCCCAATACCATCTTCTCTCTTACGGAACTGCTTCAGCCGGATGGTAGTAGCGGTAGTCAGTTTGAGGGAGCTGATGCATCTGGAGACTTGTCAGGATATTTTGAAAATCCTGGTACACTTGTTCCTGTAGAATGTGGAGGTGTTAGATTAGTTGAAAATCCAGAACCGGCCATTTCCTTTCAAGACAACAGCCTTACTTGTAGGCAATGTAACCAAACAGAACCAGCCCCTGATCTTTTTTGTGACATTTGTGGGATGTTGATTCACAGCCAATGTTCAATTTGGGCTGAATCACCTTCTAGGCTTGGAAATTGGAGGTGTGGTAATTGTCGAGAATGGGAATAG 5100 0.4122 METPVARSRGRPRKRRRKDEEKPVAKSKRQVVETKPIALVGRFVQKKFRRKRNFLGKVVYYECGLYRVHYEGGDSEDLDSGEVRAILVNDNDFDAGLTRRKVKLEELVSQISVKVADEKHKGSANQNKEELKIDAPVSCELNKEQYDDESGDLSMGLGEKGPGIEAETLPLPPPLQLPPSSGTVGVPDQYVSHLFAVYGFLRSFSTCLFLTPFTLDDFVGALNCQVANTLFDAIHVSLMRTLKHHLETVSPEGSELVSKCFRCNDWSLLDTLTWPVFAIQYLIINGYTKGPEWDGFYDEVFTREYYLFPVSRKLMILQILCDDVLESEEIKAEMNMRKDSEVGVDYDAEDIPPVEIRPGRVHPRYAKTSSCEDKESMEFASVSNAVNQTGNSISYFRDTESTEDGEDHRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVMKMYIPEGAWYCPECKINMIEPTTVKGTSLRGGEILGKDLYGQLFVGTCNHLLVLNTNDDRFGLQYYNQNDIPKVLQLLYESMQHRPMYYGICMAALQYWNIPGSVLPLSASTGKNVNLVIKKEETDFHTSLLPPSDEVNHKPINLVKGEDPLANSSLNQGDIAVSSLDISSVTTQSPSHESLCNARNKECPIVNTKLPLETSHQCAMNHHHSVDSLIAIDHAKYSLVNSHYNNLGHANDIGLPTNFSVQTKESTQVGFGKCEHNITNNFGHMGFSYKPLSYINYYMHGDFAASAAAKLTVLSSEEPRSEGHVSDNQRKTTAAIVYLQAKAFSLTASRFFWPSSEKKHVEVPRERCGWCFSCQSAVSSKKGCMLNHAALSAIKSVMKFVTGFSVLRSGEGNLPSIATYIIYTQECLRGLFVGPFQRASYRNQWRKQVEEITTYRALKPLLLEFEENIRTIAFCGDWVKRMDDCLVDSSIIQSAASSLGTTQKHAPSGRRYKKRLAIDGAKVDATKESFVWWRGSKFTKFVFQKAVLPLYMLRKAARQGGRRKISGIFYTDGSETPKRSRQLVWRVAVQMSRNASQLALQVRYLDSYLRWNDLIRQEQNTQDGKGQEPEASTFRNSNICDKKLVEGKCCYGVVFGSQKHLSSRVMKNVVEIEQDSGGKEKYWFSEAHIPLHLVKEYEECNTKVPSGEGCLNFVSHLHKRRLKAKCKDIFSYLACKRDNLDMFSCSACHMGVSFRIAFKCNACQGYCHEGCSISSKVCRNGKLEYLTTCNHCHPAKLLALKETSDGSPTTPLLLQGRETGSVMVLKGPRPKCYDQALKSARTKACSPDMNHVGPVSVLRGTRSKCDDRALTSTGTKDSPPDKKQVLSNSTSAAKSRHRNSSWGIIWKKRNNEIVENSAADIDFRLKNILLKGGSGMPQIEPVCHLCRKAYRSDLMYIFCQTCQHWYHAEAVELEESKILDVSGFKCCKCRRIKSPECPYSDAKPKTQEGKKSRSRPMVSKKGHFASDSDSGTFSDMTECEPATPVFRVDDDPLLFCISNVELITEPKLEVDVDRNTVSASGPRKLPVRRQVKREGDDNGSFWGKSLHAKCSTQTESGNLSNPVGRSSTPLEYDPGVRFDSNLLNDSESFNYASMDFEPNTIFSLTELLQPDGSSGSQFEGADASGDLSGYFENPGTLVPVECGGVRLVENPEPAISFQDNSLTCRQCNQTEPAPDLFCDICGMLIHSQCSIWAESPSRLGNWRCGNCREWE* 1700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0416 1699 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 293 335 IPR028942 -
Lan13g0416 1699 SMART testlast3 188 248 IPR018501 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1427 1443 - -
Lan13g0416 1699 ProSitePatterns Zinc finger PHD-type signature. 414 455 IPR019786 -
Lan13g0416 1699 CDD PHD_SF 1370 1417 - -
Lan13g0416 1699 SMART PHD_3 1370 1418 IPR001965 -
Lan13g0416 1699 SMART PHD_3 1651 1696 IPR001965 -
Lan13g0416 1699 SMART PHD_3 413 456 IPR001965 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1296 1322 - -
Lan13g0416 1699 Pfam PHD-finger 414 456 IPR019787 -
Lan13g0416 1699 ProSiteProfiles Zinc finger PHD-type profile. 411 458 IPR019787 -
Lan13g0416 1699 Pfam DDT domain 190 243 IPR018501 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1 28 - -
Lan13g0416 1699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 466 IPR013083 -
Lan13g0416 1699 ProSiteProfiles DDT domain profile. 188 248 IPR018501 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1540 1559 - -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1540 1555 - -
Lan13g0416 1699 SUPERFAMILY FYVE/PHD zinc finger 383 457 IPR011011 -
Lan13g0416 1699 PANTHER PHD FINGER FAMILY PROTEIN 1 1280 - -
Lan13g0416 1699 PANTHER PHD FINGER FAMILY PROTEIN 1283 1696 - -
Lan13g0416 1699 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1280 - -
Lan13g0416 1699 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1283 1696 - -
Lan13g0416 1699 SUPERFAMILY FYVE/PHD zinc finger 1646 1697 IPR011011 -
Lan13g0416 1699 SUPERFAMILY FYVE/PHD zinc finger 1367 1423 IPR011011 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1300 1322 - -
Lan13g0416 1699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1360 1435 IPR013083 -
Lan13g0416 1699 MobiDBLite consensus disorder prediction 1427 1461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0416 Lan-Chr13 2925144 2934494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0416 279 588 EF-hand Containing Proteins AT5G22760 45.397 1.11e-73 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lan13g0416 DDT 9.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0416 - - lang:109351702 2747.23