Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0411 ATGGAATTCTACTATAACCGTAGACTCCTCCTCCTAAACCATGATGCACCTTACTCCATATCCATAATCTCTAACACTGAACCTCTCATCGCAATTACTAACAACACATCATCATTATCATCATCAACAACAACAACAGTGTTTGGAAACCCTTTACAAGAAGTTCCACCACCTTCGATTTTTCCTTCCAACGTTGTCTACTTCTTCGTTATCATCATAGCATTCCTCGTACTACTCATTTGCTTCATCTTGTACTTCACTGGTCGAGATTCATCATCTCATTCTTCACGTCATCAGGAGCGCGTGGACCCCACCGTCATCGCGAAATCTCTTCCGGCGTTTTCGTACCGCAGAGATGAGAAGCATGAAATGGATGATTGTGCGATATGTTTGGAGGAGTTCAGGGAAGGTGAGAAGGTGAAGATGATTGTGTATTGCAAGCACGTGTTCCACCCTCAATGTATTGACACGTGGATCGCTAAGCACGTGACATGTCCTATCTGCAGGAGCCATAAGTTGTGCCAAGGGAATGGAGATGGAAGACAATGTAGGGAAGTGGGGTTTTGA 567 0.4427 MEFYYNRRLLLLNHDAPYSISIISNTEPLIAITNNTSSLSSSTTTTVFGNPLQEVPPPSIFPSNVVYFFVIIIAFLVLLICFILYFTGRDSSSHSSRHQERVDPTVIAKSLPAFSYRRDEKHEMDDCAICLEEFREGEKVKMIVYCKHVFHPQCIDTWIAKHVTCPICRSHKLCQGNGDGRQCREVGF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0411 188 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Lan13g0411 188 Pfam Ring finger domain 125 169 IPR001841 -
Lan13g0411 188 CDD RING-H2_PA-TM-RING 126 169 - -
Lan13g0411 188 SUPERFAMILY RING/U-box 108 172 - -
Lan13g0411 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
Lan13g0411 188 PANTHER RING FINGER DOMAIN-CONTAINING 51 170 - -
Lan13g0411 188 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0411 Lan-Chr13 2823847 2824491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0411 109 182 C3H Transcription Factor Family AT2G27940 48.649 7.98e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0411 - - lang:109363501 360.533