Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0408 ATGGAGAAGGAGCAAGGTTTGGGAAGAGAGGAAAATTTGGTGGTCATGGCAAAGGGAAAACGTACCAAACGGTTGAGGCTTTTGTCCCCTGATTGTGGTGGTGCCACTGCAGCCACATGCACTCATTCAAGTGTTAATTCTGAGGGTAGTTCCTCAACCACCACTTATGAGAGTACTGATCAAGAAGACCAAGACATGGCTAACTGCTTGATCCTCCTCGCTCGAGGTGGTGGAGGAAATTCTCACCACCATCATGATCATTTGAAAAAATCGCATGATCATGATGGTAGTGGTAATAACAATAAGATAGAGAAAGGTAGAAGCAGTGGCACTAGTGCTGGGAAATTTGAAGAGATGGCTACAGCTATAAACATTACCAAAACTGATTTCTTTATTTATGAGTGCAAAACTTGTAACCGAACCTTCCCTTCCTTTCAAGCTTTGGGTGGCCATAGGGCTGGTCACAAAAAGCCTAAGTTTGTGTTTCCGGAGGAAAAGAAAACATTATCGCAATTGCAACCACAACCGCAATCTCATGTGTTGACCAATAATGATAATTTTGAAGAAGCTGGGAAACCACACATCAAAACTACCCTTCCAATTTCGTTTCAATTGGAGAACCAGGCCAATAGATCAATTTTCAATACTAACAAGGCCAAGATTCATGAATGTTCCATATGTGGCTCAGAATTCACATCAGGGCAAGCATTGGGTGGACACATGAGGAGGCATAGAGCCGCCACAAACACCACCACCACTCAGGCTCTTGCAGCAGTGAAAGCGGAAGTTCAGCACCAGAGGAATATACTAGAATTGGATCTTAACCTTCCGGCACCGGAGGAGGATCTCCGAGAGTCCAAGTTTCAGTTTCCGGCAACCCAAAAATCTATAGTGTTGTCTGCTTCTCCGGCTTTGGTAGATTGCCATTATTAG 933 0.4416 MEKEQGLGREENLVVMAKGKRTKRLRLLSPDCGGATAATCTHSSVNSEGSSSTTTYESTDQEDQDMANCLILLARGGGGNSHHHHDHLKKSHDHDGSGNNNKIEKGRSSGTSAGKFEEMATAINITKTDFFIYECKTCNRTFPSFQALGGHRAGHKKPKFVFPEEKKTLSQLQPQPQSHVLTNNDNFEEAGKPHIKTTLPISFQLENQANRSIFNTNKAKIHECSICGSEFTSGQALGGHMRRHRAATNTTTTQALAAVKAEVQHQRNILELDLNLPAPEEDLRESKFQFPATQKSIVLSASPALVDCHY* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0408 310 PANTHER ZINC FINGER PROTEIN ZAT5 11 310 - -
Lan13g0408 310 Pfam C2H2-type zinc finger 133 158 - -
Lan13g0408 310 Pfam C2H2-type zinc finger 222 246 - -
Lan13g0408 310 SMART c2h2final6 222 244 IPR013087 -
Lan13g0408 310 SMART c2h2final6 133 155 IPR013087 -
Lan13g0408 310 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 11 310 - -
Lan13g0408 310 MobiDBLite consensus disorder prediction 36 60 - -
Lan13g0408 310 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Lan13g0408 310 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Lan13g0408 310 MobiDBLite consensus disorder prediction 34 60 - -
Lan13g0408 310 Gene3D Classic Zinc Finger 130 244 - -
Lan13g0408 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Lan13g0408 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
Lan13g0408 310 MobiDBLite consensus disorder prediction 74 113 - -
Lan13g0408 310 SUPERFAMILY beta-beta-alpha zinc fingers 133 244 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0408 Lan-Chr13 2806499 2807657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0408 1 310 C2H2 Transcription Factor Family AT2G28200 40.476 5.33e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g0408 zf-C2H2_6 2.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0408 - - aprc:113858527 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0326 7 2198645 2200458 Lan13g0408 13 2806499 2807657 LSH
Lan8g1638 8 23349539 23350951 Lan13g0408 13 2806499 2807657 LSH
Lan6g1913 6 30108517 30109343 Lan13g0408 13 2806499 2807657 PCT
Lan3g0098 3 677907 679108 Lan13g0408 13 2806499 2807657 PCT
Lan13g0408 13 2806499 2807657 Lan6g1913 6 30108517 30109343 PCT
Lan13g0408 13 2806499 2807657 Lan3g0098 3 677907 679108 PCT