Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0406 ATGGAAACCAAACCAGATCATGTTTCATCTCCTTTTATACCTCTCTCTTCTCACCTAAGCTCTTCAATTCTTTCTTCTATGGAAGAACTTGGAATTAACAACTTTGGGTGCATGCATTACAGGAGGAGATGCAAGATTAGAGCACCGTGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGTTAAGAACTCTATGGAGACTAATCCTGTGGATAGACATGAAATCCCGCGCCATGAAGTGAAAAAGGTTCAACAGTACTGCATCAACTGTGGAGTATGTTTGGGCAAGTATTTTTGTGGTACATGCAAATTCTTCGATGACGATATTTCAAAGGAGCAATACCACTGTGAAGAATGTGGCATCTGCAGAACCGGAGGCAGGGATAACTTTTTTCACTGTGAGAAATGTGGATGTTGCTACTCCAAGATAATGGAAAAGGGGCATCCTTGTGTGGAAAGAGCAATGCATCACAATTGCCCCATTTGCTTTGAGTATCTATTTGAAACGTTAAGAGATATTACCGTCTTACCTTGCGGGCATACCATACATGTAGAGTGTGTTAGAGAGATGGAACAACATCAAAGGTATTCATGCCCCGTTTGCTCAAAATCCATGTGTGATATGACAAATTTGTGGAAGAAGTTTGATGAAGTGATTGCCTCAACTCCAATGCCTAAAATGTACAAAGATAAGATGGTTTGGATATTATGCAATGACTGTGGAGAAAACTCTCATGTGCAATTCCATATAGTAGGACATAAGTGCAAGTCATGCAAGTCATACAACACGAGGCGGATACAGGGAAACCCGGGTACCTCATGCTCATCTAGAATGTCTGAGATGATTAGATGA 861 0.4065 METKPDHVSSPFIPLSSHLSSSILSSMEELGINNFGCMHYRRRCKIRAPCCDEVFDCRHCHNEVKNSMETNPVDRHEIPRHEVKKVQQYCINCGVCLGKYFCGTCKFFDDDISKEQYHCEECGICRTGGRDNFFHCEKCGCCYSKIMEKGHPCVERAMHHNCPICFEYLFETLRDITVLPCGHTIHVECVREMEQHQRYSCPVCSKSMCDMTNLWKKFDEVIASTPMPKMYKDKMVWILCNDCGENSHVQFHIVGHKCKSCKSYNTRRIQGNPGTSCSSRMSEMIR* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0406 286 SMART ring_2 162 204 IPR001841 -
Lan13g0406 286 ProSiteProfiles Zinc finger CTCHY-type profile. 97 161 IPR017921 -
Lan13g0406 286 Pfam Zinc-ribbon 209 267 IPR039512 -
Lan13g0406 286 Gene3D - 233 273 - -
Lan13g0406 286 SUPERFAMILY RING/U-box 160 209 - -
Lan13g0406 286 ProSiteProfiles Zinc finger RING-type profile. 162 205 IPR001841 -
Lan13g0406 286 ProSiteProfiles Zinc finger CHY-type profile. 30 124 IPR008913 GO:0008270
Lan13g0406 286 SUPERFAMILY Zinc hairpin stack 98 155 IPR037275 -
Lan13g0406 286 Pfam Ring finger domain 161 204 IPR001841 -
Lan13g0406 286 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 284 - -
Lan13g0406 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 216 IPR013083 -
Lan13g0406 286 Pfam CHY zinc finger 37 107 IPR008913 GO:0008270
Lan13g0406 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 25 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0406 Lan-Chr13 2789347 2792383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0406 35 271 C2H2 Transcription Factor Family AT3G18290 40.650 2.56e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0406 K10144 - gmx:100812709 479.944