Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0404 ATGTCCAAACCACCCTCCGCCTTCGACGCCCTTATGTCCGCCGCACGCGCCGCCGCAAAAAAGAAACCTCCTCACTCAACAACCTCTTCCCCTAAGAAACGAAAATCTCCACCTCCCCCAACCCCCGCTCCCGCTTCAACCTTGAACCCTAGCAGCAACCCTAAAACCCTTGATTCTCAGGACTCCGTGAAACCTGAACCGCCACCGAAGAAGCTTCGCAATGTGTCTAATTCTTCTTCGCTGGAGAAGAACGCTGAATTGAAGAAATTAGCTCCACTGCTGAAGAAGAAACCCTCCGAGTTCAAACCTAGCTCCGTAGCTACATGGGAGAAGGGTGATCCCGTTCCGTTTCTGTTCCTTTCTCTAGCGTTTGATATGATTTCAAAAGAATCCGGAAGGATTGTTATTACTGATATAGTGTGCAATCTTTTGAGGACTGTGATATATACTACACCTGAGGATTTGATCCCTGTTGTTTATCTTTCCGCGAATCGGATTGCGCCGGCGCATGAAGGGTTAGAATTGGGAATTGGAGATGCTTCCATTATCAAGGGGCTCGCTGAGGCATGTGGAAGGACTGAAGCACAGATTAAGAAGCAGTATAAGGAAAAAGGTGATTTAGGAATTGTTGCCCAAGCAAGCCGGTCTTCCCAATCTATGATGCGGAAACCTGATCCATTGACAATTAGGAAGGTTTTCAAAACCTTCCATCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATCAAAGCACTCCTTGTTGCAGCAACTGATTGTGAACCTCAATATCTAATCCGCTTGTTACAGGCTAAGTTGCGAATTGGGTATGCTGAGCAAACTCTCCTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTACAGCACCTCCTGAAGTTCAGTCTCCTTTCGAAGAGGCTTCAAAGATTGTTAAACACGTTTATTCTGTTCTTCCGGACTATGACAAAATAGCATCTGCATTGCTTGCACATGGTGTATGGGAGCTTCCAAAGACATGTACGTTTACTCCTGGCGTTCCAGTTGGACCAATGCTGTCAAAAGCAACCAAAGGTGTATCTGAAGTTCTAAATAAATTTTAGGATGTGGAGTTTACCTGTGAATATAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGCGCCGTTGAGGTTTACAGTAGAAATGCAGAACAGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAAATGTATCATCATTTGTTCTTGATTGTGAGCTTGTTGCATATGATCGTGCTAAGAAGAAAATCCTTCCTTTCCAGGTTCTTAGTACCCGGGCTCGCAAAAATGTCACTATGAACGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGTTATATCTTAATGGGAAAGCACTTCTTCAGGAAAACCTGAAAATCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTTTTCAGTTTGCAACAGCAATAATATCAAATGATGTTGAGGAAGTACAGAAATTTCTTGACCAAGCTGTTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGATGATGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGAGAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTACTTGCTTGCTATGACAACAACAATGAAGAATTCCAAAGTATTTGTAAAATAGGAACGGGATTCTCTGAAGAAATGCTCGAAGAAAGATCTACTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATATGCAGAGACAATCAACCCTGATGTCTGGTTTGAAACCAGTGAGGTGTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCTGTTTACCGTGCTGCAGTGGGCATAGTAGATTCAAATAAGGGCATTTCACTTCGGTTCCCACGTTTAATTCGTGTGCGACCTGACAAAGCTCCGGAAGAGGCCTCATCATCTGAGCAGGTTGCCGATATGTATAATGCCCAAAAACATAATCATGTGAACAACCAAGATGAGGATGAAGATGATTGA 2193 0.4277 MSKPPSAFDALMSAARAAAKKKPPHSTTSSPKKRKSPPPPTPAPASTLNPSSNPKTLDSQDSVKPEPPPKKLRNVSNSSSLEKNAELKKLAPLLKKKPSEFKPSSVATWEKGDPVPFLFLSLAFDMISKESGRIVITDIVCNLLRTVIYTTPEDLIPVVYLSANRIAPAHEGLELGIGDASIIKGLAEACGRTEAQIKKQYKEKGDLGIVAQASRSSQSMMRKPDPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGYAEQTLLAALGQAAVYTEEHSTAPPEVQSPFEEASKIVKHVYSVLPDYDKIASALLAHGVWELPKTCTFTPGVPVGPMLSKATKGVSEVLNKF*DVEFTCEYKYDGERAQIHYMENGAVEVYSRNAEQNTGKFPDVVAAVSRLKKSNVSSFVLDCELVAYDRAKKKILPFQVLSTRARKNVTMNDIKVDVCIFAFDLLYLNGKALLQENLKIRREHLYASFEEESGFFQFATAIISNDVEEVQKFLDQAVDASCEGLIIKTLNDDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSEEMLEERSTSLRSKVIPKPKAYYRYAETINPDVWFETSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLIRVRPDKAPEEASSSEQVADMYNAQKHNHVNNQDEDEDD* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0404 729 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 381 389 IPR016059 GO:0003909
Lan13g0404 729 MobiDBLite consensus disorder prediction 33 47 - -
Lan13g0404 729 CDD Adenylation_DNA_ligase_I_Euk 347 564 - -
Lan13g0404 729 MobiDBLite consensus disorder prediction 696 729 - -
Lan13g0404 729 SUPERFAMILY Nucleic acid-binding proteins 569 715 IPR012340 -
Lan13g0404 729 CDD OBF_DNA_ligase_I 569 714 - -
Lan13g0404 729 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 174 712 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lan13g0404 729 MobiDBLite consensus disorder prediction 1 82 - -
Lan13g0404 729 Gene3D - 93 360 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan13g0404 729 Gene3D DNA ligase/mRNA capping enzyme 386 511 - -
Lan13g0404 729 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 729 - -
Lan13g0404 729 Pfam ATP dependent DNA ligase domain 358 561 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan13g0404 729 ProSiteProfiles ATP-dependent DNA ligase family profile. 463 599 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan13g0404 729 PANTHER DNA LIGASE 1 22 729 - -
Lan13g0404 729 ProSitePatterns ATP-dependent DNA ligase signature 2. 535 561 IPR016059 GO:0003909
Lan13g0404 729 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 350 567 - -
Lan13g0404 729 Pfam DNA ligase N terminus 116 291 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan13g0404 729 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 99 348 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan13g0404 729 Gene3D - 566 729 IPR012340 -
Lan13g0404 729 Pfam ATP dependent DNA ligase C terminal region 586 697 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lan13g0404 729 Gene3D - 368 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0404 Lan-Chr13 2771010 2777790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0404 2 729 Core DNA Replication Machinery Family AT1G08130 68.556 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0404 K10747 - gmx:100783155 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1640 8 23369706 23376962 Lan13g0404 13 2771010 2777790 LSH