Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0391 ATGGCTCAGCTCCGAGAACTTTACATAAGTCATGCTTCAAGTCATGGATTCACAAAATCATCAAATTTAAGAGGCAAATCGTTTGGTTGTGATGTAAATATTAGCATTGACGTGCCCATTAACACTAGTGATGAAGAGTTGGGTGCACAAGAACAATTGTCCATGCAAGAAGGTGTGAAGATGGTTCCAGCATCTCACAAAGATGTGCAGTCTTTGAAAACATACAAGCTTCCACAACAATGTCAAATATGTTTGGAAAAGTTCTATGGGGAGAAAGAGAAAGCAGATGATGACGACGACGTAGAGATCACAGCAATGCCATGTGGTCATGTCTTTCACCATCATTGTATCATACAATGGCTGCAAACCAGTCACATGTGTCCTTTATGTCGTTCCCCTCTATCTACTGACAACAAAAGAAAAAGATAA 429 0.3986 MAQLRELYISHASSHGFTKSSNLRGKSFGCDVNISIDVPINTSDEELGAQEQLSMQEGVKMVPASHKDVQSLKTYKLPQQCQICLEKFYGEKEKADDDDDVEITAMPCGHVFHHHCIIQWLQTSHMCPLCRSPLSTDNKRKR* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0391 142 ProSiteProfiles Zinc finger RING-type profile. 81 131 IPR001841 -
Lan13g0391 142 SUPERFAMILY RING/U-box 80 136 - -
Lan13g0391 142 SMART ringv_2 80 131 IPR011016 GO:0008270
Lan13g0391 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 140 IPR013083 -
Lan13g0391 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 134 - -
Lan13g0391 142 Pfam Ring finger domain 80 131 IPR001841 -
Lan13g0391 142 SMART ring_2 81 130 IPR001841 -
Lan13g0391 142 PANTHER F6A14.12 PROTEIN-RELATED 46 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0391 Lan-Chr13 2653660 2654088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0391 46 134 C3H Transcription Factor Family AT1G18760 32.632 8.28e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0391 - K22378 lang:109363500 290.041