Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0383 ATGTCATATGCAGAGTCGGATATTGCTGATATGAAGGATTGTTGGTTCTTGGACAACAATTTTAATTGTCTTTCAGATGGAATTTCCGATGATGTCTTCGAGTTTTTCGATTTTCCTATAGAAGATGTGGAGACTGATTTTGTTGAAGAAGATTGGGCTGCTCAATTTAAACACATTGAAGAACCATCTCTTGGTGTTTTTTCAGTACCTCATTCAGCAGCATTATGTGATAAAACTCAAAATGAGACTCCAAAAGTTGGGATTGAGAACACTTCCACTGATTCTCTTGAAAAGACTACAGGACCTACATATGGCAAAACTACTCCGATCCAGAATGTGTCTTTTAACAGGAAAGATGTGCACAAATTCCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTTCTTCAGTTGAGAACTCCAACTCTGACTTACCTGTCATCCCATTAAAGCGTCCCCGAGGCAAACGCCAGCGGCTCTCAAGCTTCAACTTGCTATTATCACTTCCTTTCATCTCTACCTCACCCACTTTTGAAACTCGGACATCGGGGAAATTAGTAACCAGAGTAAAAAAGAAGCAGAAGAAAAAGGATCTCTTACTACTCCCCGATCATAGTGAGATGAAGAGATCCTCATCACAGGAGTCAGGTGTCCTCGGGAAATGCACACATTGCGAGGTGACAGAAACACCACAATGGAGAGAGGGACCAATGGGTCCGAAAACCCTTTGCAATGCTTGTGGAGTTCGTTACAGGTCTGGCCGGCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCCACTTTTGTAGCATCGTTGCACTCAAACTCCCACAAGAAGGTCATAGAAATGAGACACAGAGCTGCTAAGGAGACTTTTAGAGGTTCTTCTGTGATGTCTTAA 906 0.4283 MSYAESDIADMKDCWFLDNNFNCLSDGISDDVFEFFDFPIEDVETDFVEEDWAAQFKHIEEPSLGVFSVPHSAALCDKTQNETPKVGIENTSTDSLEKTTGPTYGKTTPIQNVSFNRKDVHKFQTYSPVSVFESSSSSSVENSNSDLPVIPLKRPRGKRQRLSSFNLLLSLPFISTSPTFETRTSGKLVTRVKKKQKKKDLLLLPDHSEMKRSSSQESGVLGKCTHCEVTETPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRHRAAKETFRGSSVMS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0383 301 ProSiteProfiles GATA-type zinc finger domain profile. 223 254 IPR000679 GO:0006355|GO:0043565
Lan13g0383 301 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Lan13g0383 301 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Lan13g0383 301 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Lan13g0383 301 Gene3D - 216 293 IPR013088 GO:0006355|GO:0008270
Lan13g0383 301 PANTHER GATA TRANSCRIPTION FACTOR 29 288 - -
Lan13g0383 301 MobiDBLite consensus disorder prediction 84 108 - -
Lan13g0383 301 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Lan13g0383 301 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 29 288 - -
Lan13g0383 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0383 Lan-Chr13 2588202 2591459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0383 18 299 C2C2-Gata Transcription Factor Family AT1G08010 38.966 9.83e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan13g0383 GATA 9.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0383 - - gmx:100813303 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1661 8 23572820 23576376 Lan13g0383 13 2588202 2591459 LSH
Lan3g0085 3 580553 583322 Lan13g0383 13 2588202 2591459 PCT
Lan13g0383 13 2588202 2591459 Lan3g0085 3 580553 583322 PCT