Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0379 ATGACTAAGGATGTTGAGGTTCAAGGAGAGTACTCTGCTAAGGACTATCAAGACCCACCACCAGCACCACTGTTTGATTTGGAAGAGTTAACAAAGTGGTCCTTATATAGAGCAATAATTGCTGAATTCATAGCAACACTTCTGTTCCTTTACATCACTATATTGACCATTATTGGTTACAATAGCCAAACTGATAAGAACAAAGGTGGTACTGAATGTGATGGAGTTGGTCTTTTGGGTATTGCTTGGTCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCTGGAGGACACATAAACCCAGCAGTGACATTTGGGCTTTTCGTGGGACGCAAGGTGTCACTAATAAGGGCATTCTTATACATAGTAGCACAAAGTGCTGGTGCTATCTCTGGAGCTGGATTAGCCAAAGGGTTCCAAAGATCATATTTTGAAAGGTATGGAGGTGGTGCCAACTTTGTTCAACCTGGCTACAACAAAGGTACTGCTTTGGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGAAATGCTAGAGATTCCCATGTTCCAGTATTGGCACCACTACCTATTGGATTTGCTGTGTTTATGGTTCACTTGGCTACAATCCCAGTTACTGGCACTGGAATCAACCCAGCAAGAAGTTTTGGATCTGCTGTCATTTACAACAAGGAGAAAATCTGGGATGACCATTGGATTTTCTGGGTTGGACCACTTATTGGAGCTTTTGTAGCTGCAGTGTACCATCAATACATTCTTAGAGCAGCAGCTATTAAAGCTCTTGGATCCTTCAGGAGCAACAATTAA 852 0.4249 MTKDVEVQGEYSAKDYQDPPPAPLFDLEELTKWSLYRAIIAEFIATLLFLYITILTIIGYNSQTDKNKGGTECDGVGLLGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAFLYIVAQSAGAISGAGLAKGFQRSYFERYGGGANFVQPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGSAVIYNKEKIWDDHWIFWVGPLIGAFVAAVYHQYILRAAAIKALGSFRSNN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0379 283 TIGRFAM MIP: MIP family channel proteins 41 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 Gene3D Glycerol uptake facilitator protein. 22 283 IPR023271 -
Lan13g0379 283 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
Lan13g0379 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Lan13g0379 283 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 282 IPR034294 -
Lan13g0379 283 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PANTHER AQUAPORIN PIP2-7 4 282 - -
Lan13g0379 283 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan13g0379 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0379 Lan-Chr13 2554356 2556148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0379 1 281 Major Intrinsic Protein MIP AT2G37170 77.224 4.10e-165 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0379 K09872 - gmx:100818032 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0299 7 1926687 1928674 Lan13g0379 13 2554356 2556148 LSH
Lan8g1669 8 23646590 23648509 Lan13g0379 13 2554356 2556148 LSH