Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0378 ATGACCATCCACCACCACTTACCAGTTACCAAGCACAGTACCAAAATGGCAGAGCCTCTTCTCAACACGGATCTCTCTTCTTCCAAAACCCTAAACCCAATCAACGTTCAGGATTCAACCTCCGAAGTGCATCCAACGGCTCCCAATGAAACTCAAGTCACTGAAGAAAACGACGCCGTCGTTGTTACGGGTGAGAAACGGAAGAGAGACGACGGCGACGACCGTTCTCTCCACCCTATGTGGAAGACCAGCCTATGCTCATTCTTCAGGCGCCAAGACAAGGATTGCAGCCACGGCGATGCGTGTCGCTACGCGCACACGGAGGAGGAGCTCCGTCCTCGCCCTGATAACACGTGGGACCCAACCTCTGAGCGTGCGAAGAAAGCGTTGAAGACTAAAGCCGAAGAGAAAAACAGCGTTTCGGAGGATGTTATGGTTACCGAGGCCCTCGTTGATGATGATGACGACGGTGATTCGAATAACGCGCTTAGTAAATGCTTGGTACATTTGCCGAAGACGTGGTGCTCGTCGAAATTGAAGAGTTTTCTCAACGACGAGGGTATAACTTTTAAGCTTGCAAAGAAAAAGAAAGGAATGGCGTTAGGTTTCGTTACATTTGAAGATGAAGAACAAATGAAGAGTGCCTCGAAGGATTTAGATGGAAAATTAGTCGGTGGTGGCGGCAAAAGAATAAAGGTTGCTGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAATATGGAAAATACATTGTTGGACGCTGAAACAAATGGTGATAATTCAAAGACAAGAAATGTGCGTGATGTAGTGACCCCTCTAGCTCACTTGGATTATGCTGAACAAATGGAGCAGAAAAAAACATCCCTCATGCAGATGCTGAAAAAGCTTACTAGAAATGCTCGTAAAGCTTGTCCAAACGGAGTTCCTCTTCCTGAGTGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGTGAACTAGAGGGTATCATTGCATCACCACTAGTAAATGGATATCGTAATAAGTGTGAATTTTCTGTTGGGTATTCTCTGGAAGGCAAAGTAACAGTGGGCTTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGTCCAAATGTTTCTGCAATTGCTTGCAAATATGCTACTATCTTTCAGGAATTTCTGCAGCATTCTGATTTACCAGTCTGGAACAGATTTAAAAATAATGGATTTTGGCGTCAATTGACAGTTCGAGAAGGGAGGACTAACAGAAATGCTGTTGATGCTGAAACTTTTGATGGTATTGCAGAGGCCATGCTTATTGTGCAGGTTTCTACTTCTGGCGTTGATGATGCACAAGTAGCTGCTGAATTTAAGAAACTTGCTGAGGCTTTTGTTGCGGGAGCTACTTCACATTCTCCCAAATTGCCTCTCACAGCTCTGGTTGTGCAGGATCACCAAGGAATATCCAATGTAGCACCGGCTGATGCACCGCTGCATTCACTTCCAATTTCTAAAGCAGTTAGTGCTCCTGATATCGAAGGAAAAAATGCCATGGACGTAAGAATCCATGATTATATCAGCAATCTCCGGTTTTCTATATCTCCGACAGCATTTTTCCAGGTTAACACTCTTGCTGCCGAGAAGCTATACTCACTTGCTGGAGATTGGGCACAGTTAGGTCCTGATACATTGCTATTTGATATATGCTGCGGGACAGGAACAATTGGCCTGACTTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCTCATAGGAATGCTGAAATTAATGGCATTAAAAACTGTAGATTTATTTGTTCAAAGGCAGAGGATGTAATGGGATCGCTGTTAACGGAATACCTAAATGTGGCAAAGAAAGAAGTTGATGATCCTAATATCGCTGGCAGTAACATTGATGTCTCCGAGGGCAGTTCCTGCCAAGAGCCTGAAAATGGTGAAAGGGTATCTCCACCAACTCATTCTTCAGAAAATAACAATGCAGACAATGATGTCTCTGAGGCTTTTGCCTCCGAAGTGCCTGAAAATGGTGAAAAAGCAACTCATTGTTCAGAAAATGACACTGCAGAAATCGGAAGTGGTCTTCAGAAAGATAGCAGTGTTGAAAATGGAAATTCTTCCTCGCAGCAGTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTCCATCCAACTGTGATCAAGGCTTTGAGAACTCATCCAGGCTTGCGGAGACTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTAGCAAATGCCATTGAACTTTGTACGCCATCTCCTGAAAAATTTGAGAAAGGAAATAAAGGCAACCGGGGATGGAGAAACATGAGCAGTGCTGGTCTAGCAAGGCATAGGTCCAAGTCTATGCCCATCTCTGAGGCCTTCAAACCCGTAAAAGCAATGGCTGTTGATCTTTTTCCACATACTCCACATTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2523 0.4403 MTIHHHLPVTKHSTKMAEPLLNTDLSSSKTLNPINVQDSTSEVHPTAPNETQVTEENDAVVVTGEKRKRDDGDDRSLHPMWKTSLCSFFRRQDKDCSHGDACRYAHTEEELRPRPDNTWDPTSERAKKALKTKAEEKNSVSEDVMVTEALVDDDDDGDSNNALSKCLVHLPKTWCSSKLKSFLNDEGITFKLAKKKKGMALGFVTFEDEEQMKSASKDLDGKLVGGGGKRIKVADVIPRSFEKKSNMENTLLDAETNGDNSKTRNVRDVVTPLAHLDYAEQMEQKKTSLMQMLKKLTRNARKACPNGVPLPEWILKSREIGGLPCELEGIIASPLVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSAIACKYATIFQEFLQHSDLPVWNRFKNNGFWRQLTVREGRTNRNAVDAETFDGIAEAMLIVQVSTSGVDDAQVAAEFKKLAEAFVAGATSHSPKLPLTALVVQDHQGISNVAPADAPLHSLPISKAVSAPDIEGKNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWAQLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICSKAEDVMGSLLTEYLNVAKKEVDDPNIAGSNIDVSEGSSCQEPENGERVSPPTHSSENNNADNDVSEAFASEVPENGEKATHCSENDTAEIGSGLQKDSSVENGNSSSQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPESLVANAIELCTPSPEKFEKGNKGNRGWRNMSSAGLARHRSKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLER* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0378 840 Pfam tRNA (Uracil-5-)-methyltransferase 727 775 IPR010280 GO:0006396|GO:0008173
Lan13g0378 840 ProSitePatterns RNA methyltransferase trmA family signature 1. 735 767 IPR030390 -
Lan13g0378 840 MobiDBLite consensus disorder prediction 647 678 - -
Lan13g0378 840 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 106 IPR000571 GO:0046872
Lan13g0378 840 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 269 840 IPR010280 GO:0006396|GO:0008173
Lan13g0378 840 CDD RRM_SF 166 233 - -
Lan13g0378 840 Pfam Methyltransferase domain 566 624 IPR025714 -
Lan13g0378 840 Coils Coil 279 299 - -
Lan13g0378 840 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 96 840 IPR045850 -
Lan13g0378 840 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 840 IPR029063 -
Lan13g0378 840 Gene3D Vaccinia Virus protein VP39 510 839 IPR029063 -
Lan13g0378 840 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 96 840 - -
Lan13g0378 840 SMART c3hfinal6 80 108 IPR000571 GO:0046872
Lan13g0378 840 SUPERFAMILY CCCH zinc finger 78 113 IPR036855 GO:0046872
Lan13g0378 840 MobiDBLite consensus disorder prediction 642 678 - -
Lan13g0378 840 CDD AdoMet_MTases 568 622 - -
Lan13g0378 840 MobiDBLite consensus disorder prediction 785 805 - -
Lan13g0378 840 SUPERFAMILY RNA-binding domain, RBD 169 236 IPR035979 GO:0003676
Lan13g0378 840 Gene3D - 73 114 - -
Lan13g0378 840 Gene3D - 167 236 IPR012677 -
Lan13g0378 840 ProSiteProfiles Zinc finger C3H1-type profile. 80 109 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0378 Lan-Chr13 2546275 2551296 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan13g0378 tRNA_U5-meth_tr 3.4e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0378 K15332 - pvy:116105054 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1674 8 23671265 23676687 Lan13g0378 13 2546275 2551296 LSH