Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0375 ATGGCTGACAAGAAGGAGCAGAAAAACAAAGAGGACAAGAAGAAGGAACAAAAAGTCAAAGAGAAGAAAGAGGTGAAAAACAAAGAGGAGAAGCTTAATCTCAGTAATGGCAATTTGAAACAGCATAAAGAGAAATCACTAATTGCTCTTTGTTCCAGCGACCTAAAAAAACAAGACAACAACGCCATTGTTGTTAATGGAACAACCAGTGGCACCAAACCGAAACGAAAGCGAGAGGAGCATGAAGATGATGAAGAAGACGTATCCAAAACGCATGCGTTTCCAATTAATCGTATCAGGACGGTGATTAAAGGAGAAGATCCCAATTCACGTGTTTCTCATGAAGCGATAATTGCTATCAACAAAGCTACAGAGAAGTTTCTAGAACAATTTACGCTGGACGCTTATACTCGTTGTGTCCAGGAACGTAAGAAATCTCTGAGTTACATGCACCTAGCACATGTTGTTAGTAAGGAGAGGAGATATGACTTTCTTTCTGATTTTGTTCCTGGGAAAGTGAAAGCCGAGGATGCATTAAAAGAGAGAAATTCAGGAGGGAGTGGAGGAGGTTAG 573 0.4049 MADKKEQKNKEDKKKEQKVKEKKEVKNKEEKLNLSNGNLKQHKEKSLIALCSSDLKKQDNNAIVVNGTTSGTKPKRKREEHEDDEEDVSKTHAFPINRIRTVIKGEDPNSRVSHEAIIAINKATEKFLEQFTLDAYTRCVQERKKSLSYMHLAHVVSKERRYDFLSDFVPGKVKAEDALKERNSGGSGGG* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0375 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 156 IPR003958 -
Lan13g0375 190 Gene3D Histone, subunit A 78 171 IPR009072 GO:0046982
Lan13g0375 190 MobiDBLite consensus disorder prediction 59 91 - -
Lan13g0375 190 MobiDBLite consensus disorder prediction 1 43 - -
Lan13g0375 190 MobiDBLite consensus disorder prediction 1 38 - -
Lan13g0375 190 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 6 185 - -
Lan13g0375 190 Coils Coil 1 45 - -
Lan13g0375 190 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 185 - -
Lan13g0375 190 MobiDBLite consensus disorder prediction 72 91 - -
Lan13g0375 190 SUPERFAMILY Histone-fold 70 165 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0375 Lan-Chr13 2524635 2525996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0375 66 155 CCAAT-HAP5 Transcription Factor Family AT1G07980 35.870 4.71e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan13g0375 CBFD_NFYB_HMF 3.6e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0375 - K03506 lja:Lj3g3v3086110.3 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1676 8 23686663 23688797 Lan13g0375 13 2524635 2525996 LSH