Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0374 ATGATGTCTGGAGAACTTTTCTCTCTTCCTTCTAACCCTACCAGAAGCACCTTGCTTCATGTTCAAGATCCAAACTCAAACCCTAATCCTAGCCCTAATTCAAATCCATCTAAGAAAAAGAGAAACCTACCTGGAAACCCAGATCCAAGTTCAGAAGTGATAACTCTATCCCCAAAGTCCCTTATGGCCACTAATAGATTCATCTGTGAAATCTGCAACAAGGGTTTTCAGAGAGACCAGAACTTACAGCTACATAGAAGAGGGCATAACCTTCCATGGAAGCTGAAGCAAAGAACAAACAAAGATCCAGTGAGGAAGAAGGTATATGTGTGCCCAGAAAAAAGTTGCCTGCACCATGATCCTTGTAGAGCACTAGGGGACTTAACTGGGATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAAAAATGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAGGCCCATAGCAAGATTTGTGGAACTAGAGAGTATAAATGTGACTGTGGCACCCTTTTCTCCAGGAAGGATAGCTTTGTAACACACAGATCCTTTTGTGACACATTAACTCAAGAATGTGTGAAAGTTCCATCAGCTATAAGTAACTTGAGAAGTATTAATCTGACCAATAATAATACTCAAGTGCCTAGAATCCCTCAAAGTTTTCCAGAATTTCATTCAGAATTTGGTGGTAATTCAGTTTCAGAAGCATTGGAGATTAATTATGCCAACAATTCTCATCAGCTTCATTGCTTCCCAGGCAAATTGAGTGCTTTCTCATCAAATGCAAACACTGTTCCCTGCACCCATATGTCTGATTTAGTGGAAACAATGAACATGTTTGGGTCAACACCTCAACAAACACAGTGGCTGAATTACCAAGCATCATTCACAAATGGCAATAACAACAACTTATCTATGCCATTGTCTGCACTACTGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAACAAGACTTGTCTCATACTGCTGCAAACTCTGTGTACTTCATGTCAGCCACATCACTGTTTAACACAGATAACTCATCATCCACCTTCAACAACAACAACAACAATCATAACGTTTTTGGCTTGATGGGCTCAAATATTCTATCAAACACATCAAGGATCAATAATAACAATATTGTAGAGGTTCAGAAGTTTTTCAAGGAAGGGAACTTGAATCATGGGCAAATGAACTTTGAAGGCAACAGCACCAACTATGAAGGTGGTTTTTCAATGGATGATTCAAGCTCAAATAATAATAAGGACCAGCTTGGTTTAACCAGAGATTTTTTGGGTGTTGGAGATGAGTCAATAACAATAAGCAGACCCTTCGATCTGGCTGAGTTTAATGCAATGGGATCAGCCATGGAGGTGAATAATAGCCATTATGATGGACATTACTGCTAA 1434 0.3954 MMSGELFSLPSNPTRSTLLHVQDPNSNPNPSPNSNPSKKKRNLPGNPDPSSEVITLSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDPVRKKVYVCPEKSCLHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFVTHRSFCDTLTQECVKVPSAISNLRSINLTNNNTQVPRIPQSFPEFHSEFGGNSVSEALEINYANNSHQLHCFPGKLSAFSSNANTVPCTHMSDLVETMNMFGSTPQQTQWLNYQASFTNGNNNNLSMPLSALLPHGLKQEQEENKQDLSHTAANSVYFMSATSLFNTDNSSSTFNNNNNNHNVFGLMGSNILSNTSRINNNNIVEVQKFFKEGNLNHGQMNFEGNSTNYEGGFSMDDSSSNNNKDQLGLTRDFLGVGDESITISRPFDLAEFNAMGSAMEVNNSHYDGHYC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0374 477 MobiDBLite consensus disorder prediction 1 41 - -
Lan13g0374 477 MobiDBLite consensus disorder prediction 1 52 - -
Lan13g0374 477 Gene3D Classic Zinc Finger 46 117 - -
Lan13g0374 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Lan13g0374 477 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 25 448 - -
Lan13g0374 477 SMART c2h2final6 109 139 IPR013087 -
Lan13g0374 477 SMART c2h2final6 144 164 IPR013087 -
Lan13g0374 477 SMART c2h2final6 67 89 IPR013087 -
Lan13g0374 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 448 - -
Lan13g0374 477 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Lan13g0374 477 Gene3D Classic Zinc Finger 122 202 - -
Lan13g0374 477 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lan13g0374 477 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0374 Lan-Chr13 2515557 2517726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0374 9 217 IDZ Gene Family AT5G60470 70.089 1.31e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan13g0374 zf-C2H2_jaz 6.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0374 K25870 - gmx:100781896 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1678 8 23695828 23698021 Lan13g0374 13 2515557 2517726 LSH
Lan10g0128 10 784557 786855 Lan13g0374 13 2515557 2517726 PCT
Lan3g0077 3 529024 531596 Lan13g0374 13 2515557 2517726 PCT
Lan13g0374 13 2515557 2517726 Lan10g0128 10 784557 786855 PCT
Lan13g0374 13 2515557 2517726 Lan3g0077 3 529024 531596 PCT