Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0372 ATGGAAATTGATCTGAACCATGCTGTGACTGAGGTTGAGAAGAATGCATTTTGTAATGGGGAATGTGATGAGAAAGGTGCTTGTGTTTGTTATTTATCCTCCTCTAATTCAACTTGTTCATCTTCTACTTCTTCTTCACTTCATGTGTCTTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCACTGCCAAAGAAAGGAAATGTAGTTGTCTATTTTCCACAAGGTCACTTAGAACAGGTTTCATCTTTCACACCAATTGAGATACCCACCTGTAATCTTCAACCACAAATCTTCTGCAGGGTTGTCAATGTCCAATTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTCTGCTTCCCCAGGCTGAGTTGGAAGGGATGCATTTGGATGGCAAAGAGCTTGAAGAATTAGGAGCAGATGAAGAGAAAATTGGAGGATCACCTGCAAAACCAACCCCTCACATGTTCTGCAAAACACTCACTGCTTCCGATACAAGCACTCATGGAGGATTTTCTGTTCCTCGTAGAGCCGCTGAAGAGTGTTTTCCTCCTTTGGATTATAAGCAGCTGAGACCTTCTCAAGAACTTGTTGCCAAAGACCTGCATGATGCAGAGTGGAAATTCAGACATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTTAGCCGAAAAAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTGAGGGGTGAAAATGGTGAATTGAGATTAGGAATCCGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAACTGTTATTCCAATTTCCTTTCTTATGTGGCTAATGCCATATCAACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACTCAGACTTTGTAGTGCCATACCGAAAATATATTAAAAGCATCAAGAATCCAGTGACCAATGGGACAAGATTCAAAATGAGATTTGAAATGGATGTATCTACAGAAAGAAGGTGCAATAGTGGTATGGTGATTGGAACCAGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGAATATCGAAAGCAATCATCAAGACCGGTTATCTCCATGGGAGATTGTACCTTCTGCTTCTCTCCCTCCCATGAACATTCATTCTTCGGCAAGATTGAAGAAACTGCGAACATGTCAGCAGGCTGCCTCTCCCAGCCACCTCATTACTGGAGGCAGAGGGCTAAATGACTTTGAGGAGTCTATGAGATCAACCAAGGTCTTGCAAGGTCAAGAAAAATCAGGTTTTGTTTCACACTATTATGGAAGTGATACAGTAAGAAAGGGCAACTCTGCTGAGCTTATGAGTGTTCACCCTTTCAGTTATGCAGCCTATATAGAAACTAATAGGTTTCGGAGGGTCTTGCAAGGTCAAGAAATACGTCCATCGAAATCCGTCACAGGAAATGTTGATTTCAACCTTGGTGCTTGGGGAAATCCTAATATCAGTTACACAAACATGCATCAGGTAACCAAACCCAACTTTCAATCTTTAGGACCACAAGTTCTTCAATCTGCATATTTTCCTCGTGGAGATATTAACAAAGATGGTCGAGCTAGCATGTTTTGCTCTAAACCTAAAAATCTCCAGAGAGAGAACAGTCCATACAACACGACTTCAACTCAGGCAAGGATCATGAGAAATGAAAATGGACAAACAGATCTCTCAAATGAGCATAAGCTACAGGATAATATTTCTACCGCTGCAGGATTATCGGCACCAAATATGAGGTTTCCGACTGAACACAATGTTAAGGGGAAGGTAAATGCCTGCAAACTATTTGGATTTCCTTTGTCTGGAGAAACAACTACTACCCAAAATTTACAGAACTCTGCTAGGAGTTGCACAAAGGTTCACAAACAAGGAAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTTAGCTGCTACAATGACCTGCTGAGTGAACTAGAGAAACTATTTGGCATGGAAGGCCTTCTAAGAGATCCTGATAAGGGATGGAGGATCCTCTACACTGACAGTGACAATGACATAATGGTTGTTGGGGATGACCCTTGGCATGAGTTTTGCAATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAGGTGGATAATATGACAATTGGGATGACCAGTGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGATCATGGAGGCATCAAAGTCATCCTCAGTGGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTCTAA 2337 0.4198 MEIDLNHAVTEVEKNAFCNGECDEKGACVCYLSSSNSTCSSSTSSSLHVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVSSFTPIEIPTCNLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHLDGKELEELGADEEKIGGSPAKPTPHMFCKTLTASDTSTHGGFSVPRRAAEECFPPLDYKQLRPSQELVAKDLHDAEWKFRHIYRGQPRRHLLTTGWSIFVSRKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNCYSNFLSYVANAISTKSMFHVFYSPRASHSDFVVPYRKYIKSIKNPVTNGTRFKMRFEMDVSTERRCNSGMVIGTSDLDPYRWPKSKWRCLMVRWDENIESNHQDRLSPWEIVPSASLPPMNIHSSARLKKLRTCQQAASPSHLITGGRGLNDFEESMRSTKVLQGQEKSGFVSHYYGSDTVRKGNSAELMSVHPFSYAAYIETNRFRRVLQGQEIRPSKSVTGNVDFNLGAWGNPNISYTNMHQVTKPNFQSLGPQVLQSAYFPRGDINKDGRASMFCSKPKNLQRENSPYNTTSTQARIMRNENGQTDLSNEHKLQDNISTAAGLSAPNMRFPTEHNVKGKVNACKLFGFPLSGETTTTQNLQNSARSCTKVHKQGSLVGRAIDLSRLSCYNDLLSELEKLFGMEGLLRDPDKGWRILYTDSDNDIMVVGDDPWHEFCNVVSKIHIYTQEEVDNMTIGMTSDDTHSCLEQAPVIMEASKSSSVGQPDYSPTVVRV* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0372 778 ProSiteProfiles PB1 domain profile. 650 734 IPR000270 GO:0005515
Lan13g0372 778 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan13g0372 778 SUPERFAMILY CAD & PB1 domains 651 729 - -
Lan13g0372 778 PANTHER AUXIN RESPONSE FACTOR 22 766 - -
Lan13g0372 778 Gene3D - 162 266 IPR015300 -
Lan13g0372 778 CDD B3_DNA 162 264 IPR003340 GO:0003677
Lan13g0372 778 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Lan13g0372 778 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Lan13g0372 778 Gene3D - 646 739 - -
Lan13g0372 778 SUPERFAMILY DNA-binding pseudobarrel domain 156 274 IPR015300 -
Lan13g0372 778 Gene3D - 328 400 - -
Lan13g0372 778 SMART B3_2 164 266 IPR003340 GO:0003677
Lan13g0372 778 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0372 Lan-Chr13 2483172 2488472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0372 49 778 B3 DNA Binding Superfamily AT5G60450 57.819 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan13g0372 B3 3.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0372 - - lang:109351638 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0287 7 1846094 1851299 Lan13g0372 13 2483172 2488472 LSH