Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0366 ATGGACACAACCGAAAACTTGCACCGTCTCTTATCGGAACAACGCCGCGAACTCGCCGCGGCTGAAGCCATGGACTCCGACCTTGACTTCGCCTTCCGCCTCCAATTAGAGGAAGCCCTAGCCGCTTCCGTCGCCTCTAACCCCTCCCCTTCCTCTTTCACCATCCCCGACGACCAACAACATATCCCCGACGACGCCGTTTTGAACGCTACGGCAATTCAACTCGAAGAGCTCTCTCGCGCGGAGCAGGAAATCAAGGACCGTGAGATGATCGAGGTCGAGACTCGTAAAATGAGAGAAGATCTCTGCCGTCGGATTCATGATCTAAAAGTCGCGGCTGAAATCATGAAGATGACGGAGGAGGAGTGGGAAGAGTGGGGCGACGAGTTCGCGAAACCGTTTGGGGAAGGTTGTTCCGGTTCGAAAGGTCCGGTTCGGTTCGATGAGAGTGATATTTGTAGGATTTATTTTAAGGGTTTGGTTAGTGAAGAGTGGGTTAGGGGTGAGAAGGTTGTGTTGGCTGGGATTGGTGTTGCTATTTGTGATCCTTCTGATAATTTGATTCTTGAATTGGCGAAACCGTTAGTTGGGAATGGATTGAGTAAAATTGCTGCTGAAGCTAAGGCTTTGATCGAAGGTTTCAATGCTGCCATTGCTTTGGACTTGTCTCGTGTTGCCTATTATTTTGATTACTATCCTCTCTTTCAATATGTGAGTGGAAAATGGCCTGCTAAACAGCGGAAGATTGCTATGTTAATTAATCAGGTGAATCTGCTTCGAAGAAAATTTACATACTGCAACCCAGTCCATGTGGCAAGACAAGATGTCAAATTTGCATTTAAGCTGGCAAGAGATGCAATTATTTCTCAGTTCACAAGGCCTGCAGAATCTGGGAATGGAAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGATCTGTCTCATATTTTTTCTGTTGATGACTGTCAACACCGATACTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGAGCCAAAATGCCCTCATGAAGGATGCAATTCAGTGCTTCTAGTGGACAGCTGCATGAAATTCTTGACTCCTAAATTAGTTGAGACCATGCAGCAACGTAAATTGGAAGCTTCAATTCCTATCACTGACAAAATCTACTGTCCTCATCCAAGATGCTCTGCACTAATGTCAAAAACTGCGGTTTTAGAGTACTCCAAAGGACTTATTGGTGACTCCGAACATTCAGGGCCCAAGAAATGCATAAAATGTCACGGTCTTTTCTGTTTTAGCTGCAAGGTCCCTTGGCATATTGGTCTCTCATGTTCTAATTACAAAGCTTTGAATCCGAACCCTCCTGCTGAGGATGTGAAGTTGAAGTTTCTGGCAACAAGGAGTCTATGGCGTCAGTGTGTGATGTGTAACCACATGATTGAACTTGCAGAAGGCTGCTATCACATGACGTGCAGATGTGGTAACGAATTCTGCTACAACTGTGGAGCTGTGTGGAAGAACAAAAAAGCAACATGTTCTTGTCCACTTTGGGCCGAGGACAATATTTGGTTAGAGGATCATGAGTCGGAAGAAGAGGAAGATGATGAAGAAGATTATGATTATGAATCTGATTATTCAGATGTTGTGAATAGTAATCATCAGTGGTTTTAA 1680 0.4458 MDTTENLHRLLSEQRRELAAAEAMDSDLDFAFRLQLEEALAASVASNPSPSSFTIPDDQQHIPDDAVLNATAIQLEELSRAEQEIKDREMIEVETRKMREDLCRRIHDLKVAAEIMKMTEEEWEEWGDEFAKPFGEGCSGSKGPVRFDESDICRIYFKGLVSEEWVRGEKVVLAGIGVAICDPSDNLILELAKPLVGNGLSKIAAEAKALIEGFNAAIALDLSRVAYYFDYYPLFQYVSGKWPAKQRKIAMLINQVNLLRRKFTYCNPVHVARQDVKFAFKLARDAIISQFTRPAESGNGKNLNETCVICLEDTDLSHIFSVDDCQHRYCFSCMKQHVEVKLLHGMEPKCPHEGCNSVLLVDSCMKFLTPKLVETMQQRKLEASIPITDKIYCPHPRCSALMSKTAVLEYSKGLIGDSEHSGPKKCIKCHGLFCFSCKVPWHIGLSCSNYKALNPNPPAEDVKLKFLATRSLWRQCVMCNHMIELAEGCYHMTCRCGNEFCYNCGAVWKNKKATCSCPLWAEDNIWLEDHESEEEEDDEEDYDYESDYSDVVNSNHQWF* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0366 559 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 35 525 - -
Lan13g0366 559 SMART ibrneu5 374 447 IPR002867 -
Lan13g0366 559 SMART ibrneu5 460 517 IPR002867 -
Lan13g0366 559 Gene3D - 154 291 IPR036397 GO:0003676
Lan13g0366 559 ProSiteProfiles TRIAD supradomain profile. 303 527 IPR044066 -
Lan13g0366 559 Coils Coil 68 88 - -
Lan13g0366 559 Gene3D - 445 558 - -
Lan13g0366 559 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Lan13g0366 559 Coils Coil 4 24 - -
Lan13g0366 559 MobiDBLite consensus disorder prediction 530 559 - -
Lan13g0366 559 Pfam Reverse transcriptase-like 173 286 IPR002156 GO:0003676|GO:0004523
Lan13g0366 559 MobiDBLite consensus disorder prediction 530 547 - -
Lan13g0366 559 SUPERFAMILY RING/U-box 461 524 - -
Lan13g0366 559 Pfam IBR domain, a half RING-finger domain 467 515 IPR002867 -
Lan13g0366 559 Pfam IBR domain, a half RING-finger domain 376 447 IPR002867 -
Lan13g0366 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Lan13g0366 559 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 525 IPR031127 GO:0004842|GO:0016567
Lan13g0366 559 SUPERFAMILY RING/U-box 305 387 - -
Lan13g0366 559 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0366 Lan-Chr13 2447057 2451301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0366 154 506 C3H Transcription Factor Family AT2G19610 34.078 2.17e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0366 - - aprc:113858620 797.349