Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0358 ATGAACAATAATGTTAGGAGAGGAGGTTTTTCAGAACACGATCATATCTTATTTGACAGAAAAGGACCCAATCACGGAGTACTTAATGGAGGGTTAGGTTCTGGAGCATCAACTGAAGATGACACAAGATCTAACAAGGCAGTTGAAATCCACCAGAGCTTTCATATTTCACAACAACCACCTAAAGGTCGAGTCGTAGGCTGGGAGAGATTTCTCCCTTTGAGATCAATAAAAGTTCTATTGGTGGAAGATGATGATTCAACACGCCATATTGTGTGTGCTCTGTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAGAGCCCTAGGAGATCCTGGAAATCACATTGATCTTGTCCTGACAGAGGTAGCAATGCCTATTTTATCTGGAATAGGTCTTTTGTTGAAGATTATGAACCATAGAACTCTGAAGAACATCCCTGTGATTATGATGTCATCTCATGATGCTATGGGTATAGTCTTTAAATGTTTGTCAAAAGGCGCAGCCGACTTTTTAGTGAAACCTATTCGAAGGAATGAACTAAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTGTAGCGGTAGTGTTAGTGGGAGTGAAAGTGGAACATACACCCGGAAATCTTCAAAGTCGAGAAGTAATGATGCACCTCAGAACAGTAGTGATAGCTGTGATGAGAATGACCATGGAAACAGAAGTGTTCAAGACGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAGTGTGTAGCTCAAGTTGGCAGCCCTCATCCAGCTTCGACTCATACACAATTTGTTGAAGCCACTGATAGCACGTGTGCCCAAGTGATACATACTAAGCCTGAAAAACTTAGTAGTAGGTGGGCGCATGCAACAGAAAAAGAGCGCCATGAGCTGATTGATGATCATCTTGATAATGCTGCGATGGGTAAAGACTTGGCTATCGGAATATCTTTGAATATACAAATGGAGCAACCACTTGAGTTATCTAGCAAACCAATTGGTATATTTAAGATGTCTGATGTAGATGGTAAGCAGCTTGATGAAGGACACAGTAATGTCTGTAAAAAAGGGCAACCCGAATACAACATTGAAAAAACCAGGACACAAGAAGATCAGGCTATGAATGCTGTCGATGTTGCTGATAGCAGCAATCGCCAGGCTGAAAGCAGAGACTTGAACTCTCCATATGGATTTTTTGGTTTCTCACAAACTAAAGCAAGCTGTAACTTTAAACAGTATCCATCCCTTGAACTAACTTTGAAAAGTCTGGAAGACGTAAGAGATGCTAAAAATGACACAGTTGATGAATGCAACGTTTTGAGACATTCAGATCTGTCAGCATTCTCAAGATATAATACCGCATCTTCTGCCAACCAGACTCAAACTGGAAATTTAGGAAGGTGTTCCCCATTATACAACAGCTCCATGGCACTGAATACAGATACAGCATACGATTTTCCATCTCATTCAAATGGCACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAACAGGAATGACATAGCCTCCACCAATACATATCTTAGCACCAAACCTGAAACTTTTGACCAGGATCCAGAGTCTGTAAGGGGGGTTGGCCTTTTCAATTCTTCTGCACTCCAAACTTTGCAGAACAATAGTATTTCTCCATCTCAAAAGAAAAATTGTGTTCAAGAAGAATCTGCAGAAACCATTAAAGGACAGGTGCGATGCTCTGAACAAGTACTCCAAGTCAAACACAGTTACTATAAGATTCACCACTATAATCACATTGCCCACAAAGCTACACCAGATAAACGATCAGATCCTAATGATCCTTTATTGAAAAGCTTGACCACAGCTGCTAAGCAGTGTGTATCATCAAATGTGTTAGGAGGGCCATCAGAAAGTAATTCTGCAAACTTTGACATGAATGGAAATGCAATTGAAACTGATCATGGCAGGAATAGACAGGATGGAAGTAGCAACACATTGGCAATTAGAGCCATAAATGTGGAAAACGGCAATGTGACAGCTGGCATTGGAGTTGGTGGCATTGATGGAAGAAACATAGGGAATGGAGTAGATGAAGGAAGAATTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCAGAAGAGAAAGGAAAGATGCTTTGACAAGAAGGTTCGATACCACAGCAGGAAGAAACTAGCAGAACAACGGCCACGTATTAGGGGACAATTTGTTCGACATATACTGCCGGGGGAAGAAAAGGATAAACAATGCAACATGGTATCTGCGGATAATTCTAGCAGTGTTCCACAATAA 2328 0.4137 MNNNVRRGGFSEHDHILFDRKGPNHGVLNGGLGSGASTEDDTRSNKAVEIHQSFHISQQPPKGRVVGWERFLPLRSIKVLLVEDDDSTRHIVCALLRNCSYEVTAVSNGLQAWRALGDPGNHIDLVLTEVAMPILSGIGLLLKIMNHRTLKNIPVIMMSSHDAMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSCSGSVSGSESGTYTRKSSKSRSNDAPQNSSDSCDENDHGNRSVQDGSDNGSGTQSSWTKCVAQVGSPHPASTHTQFVEATDSTCAQVIHTKPEKLSSRWAHATEKERHELIDDHLDNAAMGKDLAIGISLNIQMEQPLELSSKPIGIFKMSDVDGKQLDEGHSNVCKKGQPEYNIEKTRTQEDQAMNAVDVADSSNRQAESRDLNSPYGFFGFSQTKASCNFKQYPSLELTLKSLEDVRDAKNDTVDECNVLRHSDLSAFSRYNTASSANQTQTGNLGRCSPLYNSSMALNTDTAYDFPSHSNGTPPNQQSNGSNNRNDIASTNTYLSTKPETFDQDPESVRGVGLFNSSALQTLQNNSISPSQKKNCVQEESAETIKGQVRCSEQVLQVKHSYYKIHHYNHIAHKATPDKRSDPNDPLLKSLTTAAKQCVSSNVLGGPSESNSANFDMNGNAIETDHGRNRQDGSSNTLAIRAINVENGNVTAGIGVGGIDGRNIGNGVDEGRIALREAALTKFRQKRKERCFDKKVRYHSRKKLAEQRPRIRGQFVRHILPGEEKDKQCNMVSADNSSSVPQ* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0358 775 SUPERFAMILY CheY-like 76 200 IPR011006 -
Lan13g0358 775 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 743 IPR045279 GO:0009736
Lan13g0358 775 SMART REC_2 77 192 IPR001789 GO:0000160
Lan13g0358 775 MobiDBLite consensus disorder prediction 202 257 - -
Lan13g0358 775 Gene3D - 76 326 - -
Lan13g0358 775 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 34 743 - -
Lan13g0358 775 ProSiteProfiles CCT domain profile. 709 751 IPR010402 GO:0005515
Lan13g0358 775 Pfam CCT motif 709 750 IPR010402 GO:0005515
Lan13g0358 775 MobiDBLite consensus disorder prediction 495 523 - -
Lan13g0358 775 MobiDBLite consensus disorder prediction 202 234 - -
Lan13g0358 775 CDD psREC_PRR 79 182 - -
Lan13g0358 775 ProSiteProfiles Response regulatory domain profile. 78 196 IPR001789 GO:0000160
Lan13g0358 775 Pfam Response regulator receiver domain 79 190 IPR001789 GO:0000160
Lan13g0358 775 ProSiteProfiles Rhodanese domain profile. 91 122 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0358 Lan-Chr13 2359979 2367873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0358 35 481 Response Regulator Gene Family AT5G60100 43.939 6.33e-90 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lan13g0358 Response_reg 3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0358 K12129 - gmx:100785796 867.07