Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0328 ATGAATATGATAAACAAAAAAACCATCAATACCAAAGTTGAAATTTTCACTCCTTCAATGATGGAACTCTTATTGAATCCTTCACAGTCACACCCTCATCTTCACCATGATGAACACAACTCCATGGAAGGAAAATGTGCTGAAAAGGTTCATGTTGCTGTTGGAAAGTCGGTGCAGAAAGCTACAACTTTACTTCAATGGTGTTTAACCCACTTTAAGAACACACATATTTGCTTGATTCATGTTTATCAACCTTCTCCTCTTATCCCTACCCTTTTGGGGAAGTTCCCAGCATCCAAAGCTAATCCTGGAGTGGTGTCTGCTTTTAGAAAAGAGGAAAAGGAACAAATCATGAAGCTCTTGGACAAGTACTTGAGCATTTGCCTTGAAGCTAAGGTTAAGGCAAGCATTGCCGTAGTTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATTTGGTTAATGGGCATAATATTAGGAAGCTTGTAATTGGAGCAATACCAGAGAATTTCATGAACGTTAAAAGGAATTCCAGTAAAGCAACCTATGCTGTCAAAAATACTCCCTCATTTTGTGAAATATGGTTTATCTATAAGGGTAAACATGTCTGGACAAGAGAGGCTTGTGAAAGTCCTCATTCATTATCTTCATGTGCTCAACCTGAGGTTACAACCGCCGAAAGCTTGAGTAGTAGATCTGTTCAATATGGTATGAATGAATTATCCCATTCAGAATGTCTTCAATCACATTCGGAAAGGAGTACAATATGTAATGGAATTGGAAGTTTGATTCAGAGTGAAATCATTGAAACCGAAGCCACTTTTCCATCCAAATCATCCAGTTCTAGCCGTCATTGTTCTTCCCAAAGTTCTGTCGCGAGGTCTGTAGATAGTCTTTCAGAGGTTGAGGAAGAAAGAGTTAATTGTAAAGTTGTTGAAGCCAAAAGAGAAGCTGATACTGCAACAGAGAAGGCCTTTGTAGAGCTATTGAAGCGCAAAAGGTTGGAAATAATTGCCATCGAGGCCATAAGGAAGGTCAATTTGTTCGAATCTGCCCATGCACGTGAAGCAATGCTAAAAAAAGAGACCGAGGATGCACTGAGAGCTACAATACAGGATCAACAAAAATGCTTGGGAGAGAATAAGGAAATTGCTAGTGAGTTACAAAGGGCCATGAGAAGTATTGCCCTTCTAGATAGTTGTGCACAGGAAACAAACCGGAGGCGAGATGAAGCTGCAGATGAACTATCACTAATTCAAGCATCCATCTTAACCCTGTGGCATGAAAAGCAGCAGATCAGGAGACAGAAAATGGAAGCCTCCCGTTGGCTTGAGCGGTGGAAATCTCGTGACCAAGTTGAAGTTACTCACTGCAATCATGTCATTGGGTTTGCTGAAGAATTACCCGAGCTAGCAGAGTTTTCATTATCAGATCTTCAAAATGCAACATGTAATTTTTCTGAGAGCTTCAAAATGAGAGAGGGTGGATATGGTTGTATTTATAAGGGTGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTTCATCGACATAATTTGCAAGGACCAGCACAGTTTCATCAAGAGGTTCAGGTTCTTGGTAGTCTCCAGCATCCTCATCTATTGACTTTGCTTGGATTTTGCCCTGAAGCCTGCTCACTTGTATATGAGTACTTGCCTAATGGAAATCTTCAAGACCACCTTTTCCGTAAAAATAGTGTTTCCCCGTTGACATGGAATACTCGAGCACGATGGATTGCTGAAATTGCTAGAGCTTTTTGCTTCTTACATTCTTCCAAACCTGAAACTATTATCCATGGTGATCTGAAGCTTGAAACTGTCCTTCTTGATTCCGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGACACAGGAGGCAATCTATCCTTCTAGTTTCCGACTGAACACTGAGACAAAGGGTTCTTTTACATATACAGATCCAGAGTTTTGTAGAACTGGAGTACTAACACCTAAGTCTGATATATACTCATTCGGGCTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCTAGTGAAGTACGCAGAGCGACTTCATGTGGAAAATTGTCATCGGTTTTGGATTCTTCAGCTGGAGAATGGCCTTTAGCTGTTGTATCACGATTGGTTGAACTGGGATTGGAGTGCTGCCAACAAAATCGTAAAGACAGGCCAGAAATAACACCTACTCTAGTGAGAGAATTGGAGCAGTTACATGTTTCAGAAGAGCGACCTGTGCCACCGTTTTTCTTGTGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGTTCTACTTATGAAGGGAAGGCGATAAGTGAATGGTTAAAAAATGGGCATGAAACTTCTCCCATGACTAATCTAAAATTGAGTCACCTGCATCTTACTCCGAATCACGCACTTCGACTTGCAATCCAAGGCTGGCTTTGCAAATCTTGA 2490 0.4116 MNMINKKTINTKVEIFTPSMMELLLNPSQSHPHLHHDEHNSMEGKCAEKVHVAVGKSVQKATTLLQWCLTHFKNTHICLIHVYQPSPLIPTLLGKFPASKANPGVVSAFRKEEKEQIMKLLDKYLSICLEAKVKASIAVVEADQVQKGIVDLVNGHNIRKLVIGAIPENFMNVKRNSSKATYAVKNTPSFCEIWFIYKGKHVWTREACESPHSLSSCAQPEVTTAESLSSRSVQYGMNELSHSECLQSHSERSTICNGIGSLIQSEIIETEATFPSKSSSSSRHCSSQSSVARSVDSLSEVEEERVNCKVVEAKREADTATEKAFVELLKRKRLEIIAIEAIRKVNLFESAHAREAMLKKETEDALRATIQDQQKCLGENKEIASELQRAMRSIALLDSCAQETNRRRDEAADELSLIQASILTLWHEKQQIRRQKMEASRWLERWKSRDQVEVTHCNHVIGFAEELPELAEFSLSDLQNATCNFSESFKMREGGYGCIYKGEMLGRTVAIRKLHRHNLQGPAQFHQEVQVLGSLQHPHLLTLLGFCPEACSLVYEYLPNGNLQDHLFRKNSVSPLTWNTRARWIAEIARAFCFLHSSKPETIIHGDLKLETVLLDSALSCKICEFGFSRLVTQEAIYPSSFRLNTETKGSFTYTDPEFCRTGVLTPKSDIYSFGLIILQLLTGRTPVGLASEVRRATSCGKLSSVLDSSAGEWPLAVVSRLVELGLECCQQNRKDRPEITPTLVRELEQLHVSEERPVPPFFLCPILQEIMHDPQVAADGSTYEGKAISEWLKNGHETSPMTNLKLSHLHLTPNHALRLAIQGWLCKS* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0328 829 ProSiteProfiles Protein kinase domain profile. 485 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0328 829 Coils Coil 303 323 - -
Lan13g0328 829 Pfam Protein tyrosine and serine/threonine kinase 491 741 IPR001245 GO:0004672|GO:0006468
Lan13g0328 829 PANTHER OS10G0100500 PROTEIN 35 828 - -
Lan13g0328 829 SUPERFAMILY Protein kinase-like (PK-like) 469 747 IPR011009 -
Lan13g0328 829 CDD RING-Ubox_WDSUB1_like 763 804 - -
Lan13g0328 829 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 171 - -
Lan13g0328 829 Gene3D HUPs 44 165 IPR014729 -
Lan13g0328 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 759 829 IPR013083 -
Lan13g0328 829 Pfam U-box domain 759 828 IPR003613 GO:0004842|GO:0016567
Lan13g0328 829 Gene3D Phosphorylase Kinase; domain 1 459 557 - -
Lan13g0328 829 PANTHER OS02G0152300 PROTEIN 35 828 - -
Lan13g0328 829 ProSiteProfiles U-box domain profile. 758 829 IPR003613 GO:0004842|GO:0016567
Lan13g0328 829 SMART Ubox_2 762 825 IPR003613 GO:0004842|GO:0016567
Lan13g0328 829 CDD STK_N 49 199 - -
Lan13g0328 829 Gene3D Transferase(Phosphotransferase) domain 1 558 758 - -
Lan13g0328 829 SUPERFAMILY RING/U-box 756 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0328 Lan-Chr13 2159724 2164958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0328 48 826 U-box Gene Family AT2G45910 36.737 3.97e-167 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lan13g0328 PK_Tyr_Ser-Thr 2.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0328 - - lang:109325761 1634.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1975 6 30654304 30659601 Lan13g0328 13 2159724 2164958 PCT
Lan13g0328 13 2159724 2164958 Lan6g1975 6 30654304 30659601 PCT