Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0327 ATGGGTAACGGCGTTGGAAAACTAACCGTCTGTTTCACCGGCGACGGTGGTCGCCGAAAACAACACGAAATGTCGTTTTGTATAACGGAGCCGTTAGACGAGGGTCTGGGTCACTCTTTCTGTTACGTTCGACCCGACCCGACTCGTTTATCATCTTCAAAGGTCCATTCTGAAGAAACGACGACGTTTAGAACAATCTCCGGTGCATCGGTAAGTGCCAACACATCAACGCCACTTTCAACCGCTTTCGTTGATTTATACTCATACGGTTCAATTGATCGCGCCGCAGCTTTCGAATCTTCTACTTCCTTCGCTTCTCTTCCTCTTCAACCAATTCCGAAAGGTTTAATGAACTCGGGTCCTTTCTCCGGTAACTTAACCGGTTCGGGTCCTATTGAGAGAGGGTTTTTATCCGGTCCGATTGAACGTGGGTTCATGTCCGGTCCGATTGAAAAAGATGTTATTGTTAACGGTTCAGATCAGCTTCAGAGAAGCTTATCTCATAGTGGATTAGGGTTCAAACCTAAAAAACAAAAGGGTCGTTGGATTCGGGTTCTTCAGAGAGCGATTTCGAAGACTCTGTCTCGTGGGCAGAACTCAATTGTAGCACCGATCAAAGGGGTTATGACAGTGAAGGAACAACAAGAATGGGTTATTGCTGCAGCGGAAAAGAACCATAATGAGAATTTGACAGTGAGTAGTTTGGTTTTCAGTAATGAGGGTAGTTTGGAAGAGGATGATTCGAAGGAAAGTCAGAATCTTCAATGGGCTCAGGGGAAAGCAGGGGAGGATCGTGTCCACGTCGTGGTTTCCGAGGAACACGGTTGGGTTTTCGTAGGGATTTACGACGGTTTCAATGGTCCTGATGCACCTGATTACCTTCTATCTAATCTGTACACCTTTGTATACAAAGAATTGAAGGGGTTGCTGTGGGATGATAGTTCTGAACAAGTTGCGGTAAATGAGAATCAGAATTTGGAATTGCAAGATGGTGATGACTTTTCTCAGTGTTGTGATAATAACAATCGTCCTTGCACTAGTGACGATGCTGCGGAATTTGATGATGGTTGCAAGAGAAAGAAGGTTAAGAGTTGCAAGGGTAACTACAAAGGTTCTGCCAAGAAATGGGAGGAGAATCAGAGAAGGTGGAAGTGTGAATGGGATAGGGAAAGATTAGAGCTTGATAAAAGATTGAAGGAGCAGTTAACTCGATCCAGTTCCGGTGGGAAGAATACTAGCTCGATTAACCATTTAGATGTGTTGGAAGCTCTTTCTAGGGCTTTGAGGAAAACTGAGGAGTCTTATTTGGATGTTGCTGATAAGATGGTGATGGAGAATCCTGAGTTGGCATTGATGGGTTCGTGTGTGCTTGTGATGTTAATGAAGGGGGAAGATGTTTATGTGATGAATGTTGGTGATAGTAGAGCTGTGTTGGCACAAAAGGTGGAGCCTGATTATTGGCTTGGGAAGCTTAGGCAGGACTTGGAGCAGATCAATGAAGAAACCATGAATGATCTTGAATCCTTGGATGATACTGATAGATCAAACTTGGTTTCTACTCTAAGTGCTGTTCAGCTTACCAAGGATCACAGTACTAGTGTTGAAGAAGAAGTCCAGAGAATAAGAAATGAACACCCGGATGATCCTTATGCAGTTGTAAATGATCGTGTTAAGGGTTCTCTGAAGGTTACCCGAGCTTTTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAGATGTTTAGAATAGGCTACATTGGAACTTCTCCTTACATCAGCTGCCAACCATATCTAAAACACCACAGAGTAGGCCCGAAGGATAAATTTTTGATTCTATGCTCTGATGGGCTCTATCAATACATGTCAAACGAACAAGCGGTTGCAGAAGTTGAACTTTTCATCACGTTGCAACCTGAGGGTGACCCCGCTCAGCATTTGGTTGAAGAAGTCTTATTCCGTGCCGCAAACAAAGCAGGTTTGGACTTCCACGAGTTGCTCGAAATTCCACAAGGTGATAGGCGGCGTTACCATGATGATGTTTCCATAATTGTTATTTCTTTGGAAGGAATGATATGGAGATCATGTGTATAA 2103 0.4394 MGNGVGKLTVCFTGDGGRRKQHEMSFCITEPLDEGLGHSFCYVRPDPTRLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFVDLYSYGSIDRAAAFESSTSFASLPLQPIPKGLMNSGPFSGNLTGSGPIERGFLSGPIERGFMSGPIEKDVIVNGSDQLQRSLSHSGLGFKPKKQKGRWIRVLQRAISKTLSRGQNSIVAPIKGVMTVKEQQEWVIAAAEKNHNENLTVSSLVFSNEGSLEEDDSKESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTFVYKELKGLLWDDSSEQVAVNENQNLELQDGDDFSQCCDNNNRPCTSDDAAEFDDGCKRKKVKSCKGNYKGSAKKWEENQRRWKCEWDRERLELDKRLKEQLTRSSSGGKNTSSINHLDVLEALSRALRKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKVEPDYWLGKLRQDLEQINEETMNDLESLDDTDRSNLVSTLSAVQLTKDHSTSVEEEVQRIRNEHPDDPYAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIGYIGTSPYISCQPYLKHHRVGPKDKFLILCSDGLYQYMSNEQAVAEVELFITLQPEGDPAQHLVEEVLFRAANKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGMIWRSCV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0327 700 ProSiteProfiles PPM-type phosphatase domain profile. 246 691 IPR001932 -
Lan13g0327 700 SUPERFAMILY PP2C-like 260 692 IPR036457 -
Lan13g0327 700 SMART PP2C_4 247 689 IPR001932 -
Lan13g0327 700 Pfam Protein phosphatase 2C 416 641 IPR001932 -
Lan13g0327 700 Gene3D - 220 695 IPR036457 -
Lan13g0327 700 Coils Coil 492 512 - -
Lan13g0327 700 PANTHER - 15 700 - -
Lan13g0327 700 CDD PP2Cc 394 691 IPR001932 -
Lan13g0327 700 PANTHER PROTEIN PHOSPHATASE 2C 15 700 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0327 Lan-Chr13 2153622 2156977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0327 1 700 PP2C-type Phosphatase Gene Family AT1G07630 66.899 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0327 - - gmx:100812903 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0239 7 1492292 1495559 Lan13g0327 13 2153622 2156977 LSH
Lan8g1721 8 24013574 24016236 Lan13g0327 13 2153622 2156977 LSH