Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0304 ATGACGACAAACAACAACAACAACAAGAAATTTAGAAAAGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAGCTACATGTTAAAGAGTGGACAAGGTTGTTGGAGTGATGTGGCTAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAATTACTTGAGACCTGATCTAAAACGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTCCTTGGAAACAGATGGTCTCAAATAGCGGCACGCTTACCTGGACGTACAGACAATGAAATTAAGAATTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACTTATCCTCCACAACCGAGTCCTCATATGATCCTAACAACAAAGAAATTGCAGGGTTTACTTCTACTACACAACATTATCAACATGCTGAATTTATGCCTATGCTCAATTCACCTTCTCCTTCATCAATGCAAGAGACAGTTCTCAACACCATAATTGATAGATTGCCTATGCTAGAGCATGGAATAATGAACATGCCAGTAGCTGGTGGATTCTTCAATGGTGCAATTGATAACAACAAAGAGTTTTATTTGGAAAATGGGGTATTTGGGAGTGTAAATTTTGGGCCAGAAGGAGATATGTTTGTTCCTCCCCTAGAGAGTGTTGGAACAACTTGTGACTATAACCTCAAAGTGGAGAATGCATGCAACAACATAGATACTAATAATAGTTACCATAATAGCTGTAATAATAAGATAAGAGGTGAGAATATTAGAGATGGAGTGGAGAATTTATTTCAAGAAGAGTTAGCAATGGGAGAGTGGGATTTGGAGGAGTTGATGAAAGATGTTTCCTCCTACCCATTTCTTGATTTCTCTAGCTGA 894 0.3926 MTTNNNNNKKFRKGLWSPEEDDKLMSYMLKSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTESSYDPNNKEIAGFTSTTQHYQHAEFMPMLNSPSPSSMQETVLNTIIDRLPMLEHGIMNMPVAGGFFNGAIDNNKEFYLENGVFGSVNFGPEGDMFVPPLESVGTTCDYNLKVENACNNIDTNNSYHNSCNNKIRGENIRDGVENLFQEELAMGEWDLEELMKDVSSYPFLDFSS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0304 297 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lan13g0304 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lan13g0304 297 CDD SANT 68 108 IPR001005 -
Lan13g0304 297 SMART sant 65 113 IPR001005 -
Lan13g0304 297 SMART sant 12 62 IPR001005 -
Lan13g0304 297 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lan13g0304 297 PANTHER MYB TRANSCRIPTION FACTOR 4 297 - -
Lan13g0304 297 CDD SANT 16 60 IPR001005 -
Lan13g0304 297 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Lan13g0304 297 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lan13g0304 297 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lan13g0304 297 Gene3D - 68 135 - -
Lan13g0304 297 Gene3D - 13 65 - -
Lan13g0304 297 PANTHER MYB DOMAIN PROTEIN 55 4 297 - -
Lan13g0304 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0304 Lan-Chr13 1975412 1997398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0304 5 295 MYB Transcription Factor Family AT3G08500 45.181 3.47e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan13g0304 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0304 K09422 - gmx:100785810 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1745 8 24152085 24155170 Lan13g0304 13 1975412 1997398 LSH
Lan10g0342 10 2301256 2303256 Lan13g0304 13 1975412 1997398 PCT
Lan13g0304 13 1975412 1997398 Lan10g0342 10 2301256 2303256 PCT