LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0299	ATGACAGAGGAAGTTCGAACCCTATGGATTGGAGACTTACAATATTGGATTGATGAATCTTATCTTTCTCACTGTTTCTCTCACACTGGTGAAGTTGTTTCCATCAAAATCATTCGCAACAAAATCACTTCCCAACCCGAAGGTTACGGTTTCATCGAATTCGTTACCCACGCTGCAGCTGAGCGCGTTCTCCTCACCTACAATGGTACTCAAATGCCCGGAACTGAACTCAATTTCCGTTTAAATTGGGCTTCTTTCGGTGTTGGAGAGCGTCGACCTGACGCCGGTCCTGATCACTCTATTTTCGTTGGTGATCTTGCACCTGATGTTACTGACTTTCTCCTTCAGGAAACTTTTCGAGCAAATTATCTTTCGGTTCGCGGCGCCAAAGTCGTTACTGATCCTAATACTGGTCGCTCCAAGGGGTATGGGTTTGTTAAATTCTCTGATGAGAATGAGAGGAATCGTGCAATGAGTGAAATGAATGGGGTTTATTGTTCTACTAGGCCTATGCGTATTAGTGCTGCTACACCTAAGAAGACTAATACTTTGCAACATCAATATGCTCCTCCTAAAGCAATATATCCAATCCCAGTGGCATACACTCCTCCAGTGAGTACAGTTCCACCAGATTATGATATCAATAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAGCTGAAGCAAATTTTCCAGCAATTTGGAGATATTGTATCTGTCAAAATTCACGCTGGCAAAGGATTTGGATTTGTTCAATTTGGGACTAGAGCATCTGGTGAAGAAGCCATTCAGAGAATGCAGGGGAAGATGATAGGTCAGCAAGTGGCTCAAATTTCTTGGAGTAGTACCTCATCAGCTAGACAGGACATACCTGGTGGCTGGGGGCCTCAGGTGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGACGCCTATGCTTATGGAGCTACTCAGGATCCTTCCTTGTATGCATATGGTGCATATGCTGGTTATGCACAATACCCACAACAGGTGGAAGGTGCTCAAGACATGTCAGCTATGCCTGTGCCTACAGAGGAGTTGTATGATCCCATGGCGATGCCTGATGTGGATAAGTTAAATTCTGCATATCTCTCAGTGCATGCAAATGCCATTTTAGGGCGGTCTCTCTGGCTCAAAACCTCGTCATCTCCACAGCAAGCCTAG	1215	0.4469	MTEEVRTLWIGDLQYWIDESYLSHCFSHTGEVVSIKIIRNKITSQPEGYGFIEFVTHAAAERVLLTYNGTQMPGTELNFRLNWASFGVGERRPDAGPDHSIFVGDLAPDVTDFLLQETFRANYLSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMSEMNGVYCSTRPMRISAATPKKTNTLQHQYAPPKAIYPIPVAYTPPVSTVPPDYDINNTTIFVGNLDLNVTEEELKQIFQQFGDIVSVKIHAGKGFGFVQFGTRASGEEAIQRMQGKMIGQQVAQISWSSTSSARQDIPGGWGPQVDPSQWSAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMPVPTEELYDPMAMPDVDKLNSAYLSVHANAILGRSLWLKTSSSPQQA*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0299	404	SUPERFAMILY	RNA-binding domain, RBD	3	77	IPR035979	GO:0003676
	Lan13g0299	404	Gene3D	-	5	84	IPR012677	-
	Lan13g0299	404	CDD	RRM1_SECp43_like	7	87	-	-
	Lan13g0299	404	SUPERFAMILY	RNA-binding domain, RBD	87	187	IPR035979	GO:0003676
	Lan13g0299	404	Gene3D	-	85	190	IPR012677	-
	Lan13g0299	404	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	2	347	-	-
	Lan13g0299	404	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	217	289	IPR000504	GO:0003723
	Lan13g0299	404	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	6	84	IPR000504	GO:0003723
	Lan13g0299	404	SUPERFAMILY	RNA-binding domain, RBD	198	318	IPR035979	GO:0003676
	Lan13g0299	404	SMART	rrm1_1	100	174	IPR000504	GO:0003723
	Lan13g0299	404	SMART	rrm1_1	218	285	IPR000504	GO:0003723
	Lan13g0299	404	SMART	rrm1_1	7	80	IPR000504	GO:0003723
	Lan13g0299	404	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	101	166	IPR000504	GO:0003723
	Lan13g0299	404	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	219	280	IPR000504	GO:0003723
	Lan13g0299	404	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8	77	IPR000504	GO:0003723
	Lan13g0299	404	PANTHER	POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED	2	347	-	-
	Lan13g0299	404	CDD	RRM2_SECp43_like	98	177	-	-
	Lan13g0299	404	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	99	178	IPR000504	GO:0003723
	Lan13g0299	404	Gene3D	-	206	296	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0299	Lan-Chr13	1941170	1945045	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan13g0299	7	313	Eukaryotic Initiation Factors Gene Family	AT1G49760	25.868	2.22e-25	106

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0299	-		-	cam:101496574	653.669