Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0296 ATGAAACCAACAGATTGGAATCTGATTAATAATCACAGCAGTAATGAAGTTCCAAAAGTTGCTGATTTTCTTGGTGTTAGTAAGTCTGAAAGTCAGTCAGATCTTGGCGCCATGAATGAAATTCAGCCAAATGAATCAGAATATCTTCTCCCAAATAACAGTCTTGCTCCCATGCAAAACACAGTGGTGACCACTTCCAACAACTATGAATATACAGAAAATGCTAAAAATAACTTGCAGTCATTGACATTATCTATGGGAAGTGGAAAGGATTCAACATGTGAAATTAGCACTGACAATAATAGTACACAGATTGTTGAAGCTGCACCTTCTAGAAGAACATCAGATACCTTTGGGCAGAAAACATCTATATATCGTGGTGTAACAAGGCATAGATGGACGGGAAGGTATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGTCAAGTCTATTTGGGTGGATATGACAAAGAAGAAAAGGCCGCTAGGTCATATGATTTAGCTGCACTGAAGTACTGGGGAACCTCCACCACTACCAATTTTCCAATCAGCAACTATGAGAAGGAAATTGATGAAATGAAGCACATGACAAGACAGGAGTTTGTGGCCTCTATCAGAAGGAAGAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGGAGGGTCGCAGGAAACAAAGATCTATACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTTAACGCTGTGACTAACTTTGACATGAGTCGCTATGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGTGGTGCTGCTAAACGGCTTAAAGAAGCTCAAGCTCTTGAATCTTCAAGGAAACGTGATCAAGAAATGATTGCACTTGGTTCAAGTTTTCAATTTGGAACCTCAAGCTCTAGCAGGCTACAACCTTATCCACTAATGCAGCATTTTGAACAACCTCAACCATTGCTAACCCTACAAAACCATGACATCTCTCACTTTTCACAAGACCCTTCTACACTACACCAGAGTTATCTCCAAACACAGCTTCAGTTGCACCAGCAAAGTAGCTCTTCTTACCTTCACCAACCAGCTCAGAATTCTCAATTCTATAATAGCTATCTTCAAAATCATCACCCATCTTTGCTTCCTGGAATGATGAACATGGGTTCTTCATCATCATCTATATTGGAGAATGATAATCACAATGTTAGAGGGTATACAGGGAATGTTAGTGCTGTGGGACCAGGAGAGGAACTTGGAATGGTTAAGGTTGACTATGACATGTCTTCCGGCGGTTATAGTGGTTGGTCGGCGGAGGGGGCGGAGTCGATGCAGGCATCAAACGGTGGTAGTGTGTTTACAATGTGGAATGAATGA 1482 0.4204 MKPTDWNLINNHSSNEVPKVADFLGVSKSESQSDLGAMNEIQPNESEYLLPNNSLAPMQNTVVTTSNNYEYTENAKNNLQSLTLSMGSGKDSTCEISTDNNSTQIVEAAPSRRTSDTFGQKTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKRDQEMIALGSSFQFGTSSSSRLQPYPLMQHFEQPQPLLTLQNHDISHFSQDPSTLHQSYLQTQLQLHQQSSSSYLHQPAQNSQFYNSYLQNHHPSLLPGMMNMGSSSSSILENDNHNVRGYTGNVSAVGPGEELGMVKVDYDMSSGGYSGWSAEGAESMQASNGGSVFTMWNE* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0296 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 491 - -
Lan13g0296 493 ProSiteProfiles AP2/ERF domain profile. 124 190 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 SUPERFAMILY DNA-binding domain 123 192 IPR016177 GO:0003677
Lan13g0296 493 Gene3D AP2/ERF domain 226 286 IPR036955 GO:0003700|GO:0006355
Lan13g0296 493 Gene3D AP2/ERF domain 124 192 IPR036955 GO:0003700|GO:0006355
Lan13g0296 493 CDD AP2 123 192 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 PRINTS Ethylene responsive element binding protein signature 266 286 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 491 - -
Lan13g0296 493 CDD AP2 225 286 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 SUPERFAMILY DNA-binding domain 225 286 IPR016177 GO:0003677
Lan13g0296 493 Pfam AP2 domain 124 182 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 Pfam AP2 domain 227 276 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 SMART rav1_2 124 196 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 SMART rav1_2 226 290 IPR001471 GO:0003700|GO:0006355
Lan13g0296 493 ProSiteProfiles AP2/ERF domain profile. 226 284 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0296 Lan-Chr13 1924207 1927231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0296 5 493 AP2-EREBP Transcription Factor Family AT3G20840 62.069 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan13g0296 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0296 K09285 - gmx:100788471 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1752 8 24200376 24203764 Lan13g0296 13 1924207 1927231 LSH