Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0295 ATGAATTCAAACGACTGGCTTTCCTTCCCACTTTCTCCTACTCATTCTCCATTACAAGCCCATGACGATCTTCAAGCCACTCAATATCATCAATTTCCTCTTGGGTTAGTGAATGAGAACATGGAAAACCCTTTCCAAATTCATGATTGGCATCTGATTAATACTCAAAGCAATGAAGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAGCAGGTCTGAAAATCACTCAGATCTTCCTGCTATGAATGAAATTCAGCCAAATGAATCAGAATACCTTCTCACAAATGCGCCCATGCAAAATACATCATTAACAACATCTAGCAACTATGACTATCAAGAAAGTGCTAATAGTAACTTGCAATCGTTGACATTATCAATGGGAAGTGGTAAAGATTTGATTTGTGAAACTAGCGGTGACAATAGTACAAAGACTGTTGAAGCTGCCCCTTCTAGAAGAACTTTGGATACCTTTGGGCAGAGAACATCGATATATCGTGGTGTAACAAGGCATAGATGGACTGGAAGATATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGACAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCCGCTAGGGCTTATGATTTAGCTTCATTGAAGTATTGGGGTATATCCACCACAACCAATTTTCCAATCAGCAACTATGAGAAGGAAATCGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCTCTATTAGAAGAAAAAGTAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGGAGATGGCAAGCAAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTAGGAACTTTTAGTACTGAGGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTTAAAGCTGTAACTAACTTTGACATGAATCGTTACGATGCAAAAGCCATTCTTGAAAGCAACACTCTCCCGATTGGAGGTGGTGGTGCTAAACGATTAAAAGAAGCTCAAGCCCTTGAAATCTCAAGGAAACATGATCAAGAAATGATTGCACTTGGACAAAGCTTTCAATATGGAACCTCAAGTTCTATCAGGCTACAACCTTATCCTCTAATGCAGCAATTTGAACAACCTCCTCAACCATTGCTAACCCTACAAAACCATGACATGTCTCACTTCTCTCAAGACCATTCTTCCTTACATCCGAGTTATCTCCAAACACAGCTTCATTTGCACCAGCAAAGTGGCTCTTCTTACATTCACCAATCAGCTCAGAATGCTCCATTCTACAATAGTTACCTTCAGAATCATCACCCAGCTTTGCTTCAGGGAATGATGAACATGGGTTCTTCTTCATCATCATCATCTTTGATGGAGAATGATAATAACAATGTTGGTGGTTTTACTGGGAACGTTAATGCTGTCGGTTCATCAGAACAACTTGGGTTGGTTAAGGTTGATTATGACATGTCTTTGGGTAGTTATGGCGGCTGGTCGGAGGAGGGGACGGAGTCCATGGAGGCATCAACAGCTGGTGGTGGTGGTGGTGTGTTTAACATGTGGAATGAATGGCAGAAACAATGA 1632 0.4093 MNSNDWLSFPLSPTHSPLQAHDDLQATQYHQFPLGLVNENMENPFQIHDWHLINTQSNEEVPKVADFLGVSRSENHSDLPAMNEIQPNESEYLLTNAPMQNTSLTTSSNYDYQESANSNLQSLTLSMGSGKDLICETSGDNSTKTVEAAPSRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLASLKYWGISTTTNFPISNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLKAVTNFDMNRYDAKAILESNTLPIGGGGAKRLKEAQALEISRKHDQEMIALGQSFQYGTSSSIRLQPYPLMQQFEQPPQPLLTLQNHDMSHFSQDHSSLHPSYLQTQLHLHQQSGSSYIHQSAQNAPFYNSYLQNHHPALLQGMMNMGSSSSSSSLMENDNNNVGGFTGNVNAVGSSEQLGLVKVDYDMSLGSYGGWSEEGTESMEASTAGGGGGVFNMWNEWQKQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0295 543 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Lan13g0295 543 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Lan13g0295 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 537 - -
Lan13g0295 543 CDD AP2 265 324 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 537 - -
Lan13g0295 543 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 SUPERFAMILY DNA-binding domain 265 325 IPR016177 GO:0003677
Lan13g0295 543 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Lan13g0295 543 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0295 Lan-Chr13 1917310 1920081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0295 1 539 AP2-EREBP Transcription Factor Family AT3G20840 58.418 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan13g0295 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0295 K09285 - gmx:100788471 785.793