Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0292 ATGTCGTCAACCACCGCACCCGGCGGCGACTCTCCCTCCATCCTCGAAACGCCGACGCTAGATACGGAGTCTCGCGAGCTCCTCCACACTATTTCCGAGCACGGCGGATACGCCTACGTGAGCATGGCGGCGATGGCAGCCGCCGGAGACTTCCGCGCCGCCGAAGCGGCACGGGAGATGGCGTGGGAGCAGCTTCACTCCGGTCCGTGGCACTCGGTGCTTCCGGTGTGGCGCGACGCGTACTCGATGGCGTGCCTCCACGTGGCGAAGCACCACTATGGCAATGGCGAGTTGAAAGAAGCGCTTAGGGTTTTGGACATGGGAATCATCATGGGAGGAACGCTCCTCGTAAAGGATCTTCACTCTGCTGTTGATAAGGTTTCCGAGAAAGCGAGGAATGCTAAGGTTTGTGATGGAAGGTGTGAAGATTTAGAGAACTCTGATCATAGACTCGTTGGTCAAGAATTTAATATGACTAAGGTGCTCCAGCTTTTACCTGTCAAATCCCTTACTTCTAAGCTCGTGGTGAAGAGGTCCGCGCTGTCATTGGAGCAGTTCCTGACAGATCATTACCTTTCCAGCTCTCCAGTTATAATCAGTGACTGTATGGCTCATTGGCCGGCCAAAATGAAGTGGAATAACATAGATTATTTGCTAAGAGTTGCTGGTGACCGTACCGTTCCGGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTCAGCGGATAAAGTCAAATGACTATTCTCCTATTGGTCCTACATATCTTGCTCAACATCCATTATTTGATCAGATAAGTGAGCTTCGGAAAGATATATTTATTCCTGATTATTGTTTTACTGGCGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACGGTAACACCATTACATCATGATCCACATCATAACATACTAGCTCAGGTTATTGGGAAAAAATACATCAGGCTTTACTCTGCATCTTTGTCAGAGGATCTTTCCCCCTATCCTGATACCATGCTTAGCAATTCCAGCCAGGTTGACTTAGATGACATAGATGAAAGGAAGTTTCCGAAGGTGGCAGACCTGGAATTTGTAGACTGCATTTTAGAGGAAGGTGAAATGTTATATATCCCTCCAAAATGGTGGCACTATGTTCGTTCTTTAACTCCAAGTTGCTCTGTTAGCTTTTGGTGGAGTGAAGGTGAAAGTTCAGATGCATACTAA 1251 0.4772 MSSTTAPGGDSPSILETPTLDTESRELLHTISEHGGYAYVSMAAMAAAGDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGELKEALRVLDMGIIMGGTLLVKDLHSAVDKVSEKARNAKVCDGRCEDLENSDHRLVGQEFNMTKVLQLLPVKSLTSKLVVKRSALSLEQFLTDHYLSSSPVIISDCMAHWPAKMKWNNIDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIKSNDYSPIGPTYLAQHPLFDQISELRKDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVIGKKYIRLYSASLSEDLSPYPDTMLSNSSQVDLDDIDERKFPKVADLEFVDCILEEGEMLYIPPKWWHYVRSLTPSCSVSFWWSEGESSDAY* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0292 416 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 409 - -
Lan13g0292 416 PANTHER - 36 409 - -
Lan13g0292 416 Gene3D Cupin 174 408 - -
Lan13g0292 416 Pfam Cupin-like domain 185 409 IPR041667 -
Lan13g0292 416 ProSiteProfiles JmjC domain profile. 274 416 IPR003347 -
Lan13g0292 416 SUPERFAMILY Clavaminate synthase-like 179 408 - -
Lan13g0292 416 SMART cupin_9 265 415 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0292 Lan-Chr13 1893351 1898071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0292 169 407 Acyl Lipid Metabolism Gene Families AT3G45880 25.589 6.58e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan13g0292 Cupin_8 8.3e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0292 K24444 - gmx:100813075 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1756 8 24227990 24233066 Lan13g0292 13 1893351 1898071 LSH