Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0288 ATGGATTCCTCTGATGATATGCACGATGCCAACGATATCGATTCCCTCGATGATGATTTCTACAGCGACGATGCTCCCGTCGATTACTACAGCGACTACGATGATGACGCTGGTGATGATTATTTCGACGATGCTGATGATGCCGACCGAGTCCTCTCTCGTCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCAGATATCCAGCAAAGACAAGACGAGGACATCAATAGAGTTGCAACTGTTCTTTCCATATCAAAAGTTTCTGCAAGCATACTACTCCGTCACTATAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGACAGTGTCCGAAAAGCAGTTGGTTTGTTGGAGCAGCCAGTTGTCCAGTATCCTAATGATGAAGAACTTGCTTGTGGCATCTGCTTTGAAAAGTATCCTCGTGCTAAGATTCAAATGGCTTCTTGTGGCCATCCTTACTGTATCTCATGCTGGGCAGGATATATTGGCACATCCATTAATGATGGTCCTGGGTGTTTGATGTTGAGATGTCCGGATCCAACTTGTGCTGCTGCTGTTGGTCAAGATATGATTGATCTCATAGCATCTGACGATGATAAACATAAATATGATCATTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCCGCCCCAGGTTGTGAGTATGCGGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATTGTTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTGGACTGTGGCACAGTGGCAAAGTGGATTTTGAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATACTTGCTAACTCCAAGCCATGTCCCAAGTGCAAGCGGCCTATTGAAAAAAACCAAGGGTGCATGCACATGACATGCACACCACCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAATCAGCTAAGCAAGAGGGAGTGTATGATGATTCTGAAAAGAGAAGAGAAATGGCAAAGAATTCACTGGAGAGGTACACACACTATTATGAGCGGTGGGCCAGCAATCAAACTTCAAGACAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGCGACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGTTACAAATAGTCGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGTTACTATTTACCGGATGATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTGCATCCATTCATCAATGCTGATGCTCCATCTAGAGAATTTAATGACTTTCGTACAAAGCTAGCTGGATTGACCAGTGTGACTAAGAACTTCTTTGAGAACTTAGTTAGAGCATTAGAGAATGGTCTATCTGATGTGGGTGCTAATCGAGCTGACTCCATCGAAGCAACAAGCTCAAAAAACGCCGCGGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTCTGCAAAGCAGCATTTCTGATGATAATCATTGGTTTTGCGAGCAATGTACCTATGCAAATGTCAAATCTGCCACCGCATGTCAGATTTGTAATCATCAGCGTCAATGA 1755 0.4376 MDSSDDMHDANDIDSLDDDFYSDDAPVDYYSDYDDDAGDDYFDDADDADRVLSRRPEQNFTILKESDIQQRQDEDINRVATVLSISKVSASILLRHYNWSVSKVHDAWFADEDSVRKAVGLLEQPVVQYPNDEELACGICFEKYPRAKIQMASCGHPYCISCWAGYIGTSINDGPGCLMLRCPDPTCAAAVGQDMIDLIASDDDKHKYDHYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYESAKQEGVYDDSEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDDEHAKKQFFEYLQGEAESGLERLHQCAEKELHPFINADAPSREFNDFRTKLAGLTSVTKNFFENLVRALENGLSDVGANRADSIEATSSKNAAGSSKGRGGRGKGTLQSSISDDNHWFCEQCTYANVKSATACQICNHQRQ* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0288 584 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Lan13g0288 584 ProSitePatterns Zinc finger RanBP2-type signature. 560 579 IPR001876 -
Lan13g0288 584 ProSiteProfiles Zinc finger RanBP2 type profile. 556 584 IPR001876 -
Lan13g0288 584 SUPERFAMILY RING/U-box 131 218 - -
Lan13g0288 584 SUPERFAMILY RING/U-box 207 275 - -
Lan13g0288 584 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 535 - -
Lan13g0288 584 SUPERFAMILY RING/U-box 287 335 - -
Lan13g0288 584 MobiDBLite consensus disorder prediction 1 38 - -
Lan13g0288 584 Pfam Ariadne domain 355 517 IPR045840 -
Lan13g0288 584 SUPERFAMILY Ran binding protein zinc finger-like 556 583 IPR036443 -
Lan13g0288 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 535 IPR031127 GO:0004842|GO:0016567
Lan13g0288 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 217 IPR013083 -
Lan13g0288 584 SMART ibrneu5 272 342 IPR002867 -
Lan13g0288 584 SMART ibrneu5 206 268 IPR002867 -
Lan13g0288 584 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Lan13g0288 584 Pfam IBR domain, a half RING-finger domain 207 268 IPR002867 -
Lan13g0288 584 MobiDBLite consensus disorder prediction 529 551 - -
Lan13g0288 584 MobiDBLite consensus disorder prediction 11 38 - -
Lan13g0288 584 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Lan13g0288 584 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Lan13g0288 584 Gene3D - 264 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0288 Lan-Chr13 1853329 1859752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0288 17 583 ARIADNE family AT1G65430 70.629 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0288 K11968 - gmx:100810427 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0197 7 1194288 1200430 Lan13g0288 13 1853329 1859752 LSH
Lan6g2175 6 32146810 32155445 Lan13g0288 13 1853329 1859752 PCT
Lan3g0260 3 1698556 1706088 Lan13g0288 13 1853329 1859752 PCT
Lan13g0288 13 1853329 1859752 Lan6g2175 6 32146810 32155445 PCT
Lan13g0288 13 1853329 1859752 Lan3g0260 3 1698556 1706088 PCT