Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0287 ATGGGAAGTTGCATTTCATCACAAGGAAAAACATACCCACGTAAAAGGTCTAAGGAACCTATCACCAAACCTTCTCCAACAAGAAACATCCAACATGATCATTATACTTATGACCCACCAACACCAACCGCCGCGCGGCGCTCATCCGTGGCCTCAATGCGGCTGCCGATCACCGTGATAATGAGCCCTTCTCCGGGTAGTATATTCGACAAATATCAATTAGGGAAGGAGCTAGGGAGAGGAGAATTTGGTGTGACACATAGGTGTGTGGATTTGAAGAGTGGTGAGGCTTTTGCATGTAAGAAGATAGCTAAGACAAAGTTGAGAACAGAGATTGATATTGCTGATGTGAGAAGAGAGGTTCAGATCATGAGACATTTGCCTAAACATCCTAATATTGTGTCATTTAGAGAGGCTTATGAGGATAGAGATGCTGTTTATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATAGGATTGTTGCTAAGGGACATTATACCGAACGTGCTGCTGCTAATGTTACCAAGACAATACTTGAAGTTTGTAAGCTATGTCATGACGAGGGCGTAATACACAGGGACTTAAAACCTGAAAATTTCTTATTTGCGGATGGAAGTGAGAATAGTCCCTTAAAGGCAATTGATTTTGGACTTTCCACCTTCTATGAAGCTGGGGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCAGAGGTCTTAAGACGTAACTATGGACCCGAAGTCGATGTGTGGAGCACAGGCGTTATTCTGTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACTGAAGAAGGGATTGCACAGGCCATCATCCGCAGTAATTTAGATTTCACAAGAGATCCATGGCCTAAAGTTTCAGAAGAAGCAAAAGACATAGTTAAGCGTATGCTTGATCCAAATCCACAAACCCGTGTAACAGTTCAAGAAGTTCTTGAACATTCTTGGATACAAAACAAGGATCGTGCCCGAAATATTTCTCTTGGAGACCAAGTAAGAATGAGAATCAAGACATTCTCCTTGATGAACAGATTCAAAAAGAAGGTTCTTAGAGTTGTGGCTGATAACCTGCCAGATGAGCAAGTTCAAGGTATAAGGAAAATGTTTGATATGATGGACAAGGACAAAAATGGGCACTTAACATTTGAAGAGCTCAAAGATGGCCTTGCAATGCTTGGACACCCTCTTCCTGATCCTGATGTTCAGATGTTAATGGAGGCTGCAGATATTGATGGAAATGGCACCCTGAGTTGTGAAGAGTTTATAACAATGAGTGTTCATCTGAGAAAGATTGAAAGTGATGAGCATCTCACTGAAGCATTCAATTACTTTGACAAGAATCAGAGTGGGTATGTTGAGTTCGAGGAGTTGAAAGATGCCTTATCAGATGAAGATTCGGGACTTAATGGTGACGAGGTGATCAGAGACATTCTAAATGATGTCGACTTGGATAAGGATGGTAAGATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTAGGCAGTATTCAAGAGCAATGCTAAACGCATTAAGCATCAAGATGTTCAAAGACAACTCTATAAGTGCAGCTAACTAA 1641 0.4138 MGSCISSQGKTYPRKRSKEPITKPSPTRNIQHDHYTYDPPTPTAARRSSVASMRLPITVIMSPSPGSIFDKYQLGKELGRGEFGVTHRCVDLKSGEAFACKKIAKTKLRTEIDIADVRREVQIMRHLPKHPNIVSFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKLCHDEGVIHRDLKPENFLFADGSENSPLKAIDFGLSTFYEAGERFSEIVGSPYYMAPEVLRRNYGPEVDVWSTGVILYILLCGVPPFWAETEEGIAQAIIRSNLDFTRDPWPKVSEEAKDIVKRMLDPNPQTRVTVQEVLEHSWIQNKDRARNISLGDQVRMRIKTFSLMNRFKKKVLRVVADNLPDEQVQGIRKMFDMMDKDKNGHLTFEELKDGLAMLGHPLPDPDVQMLMEAADIDGNGTLSCEEFITMSVHLRKIESDEHLTEAFNYFDKNQSGYVEFEELKDALSDEDSGLNGDEVIRDILNDVDLDKDGKISFEEFKAMMKTGGDWKMASRQYSRAMLNALSIKMFKDNSISAAN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0287 546 Gene3D Transferase(Phosphotransferase) domain 1 158 339 - -
Lan13g0287 546 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0287 546 SMART efh_1 377 405 IPR002048 GO:0005509
Lan13g0287 546 SMART efh_1 486 514 IPR002048 GO:0005509
Lan13g0287 546 SMART efh_1 449 477 IPR002048 GO:0005509
Lan13g0287 546 SMART efh_1 413 441 IPR002048 GO:0005509
Lan13g0287 546 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Lan13g0287 546 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Lan13g0287 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 527 - -
Lan13g0287 546 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Lan13g0287 546 CDD EFh 449 512 IPR002048 GO:0005509
Lan13g0287 546 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Lan13g0287 546 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Lan13g0287 546 Pfam EF-hand domain pair 448 512 IPR002048 GO:0005509
Lan13g0287 546 Gene3D - 340 514 - -
Lan13g0287 546 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0287 546 MobiDBLite consensus disorder prediction 1 45 - -
Lan13g0287 546 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Lan13g0287 546 SUPERFAMILY Protein kinase-like (PK-like) 68 338 IPR011009 -
Lan13g0287 546 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 52 527 - -
Lan13g0287 546 MobiDBLite consensus disorder prediction 23 45 - -
Lan13g0287 546 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Lan13g0287 546 CDD STKc_CAMK 71 329 - -
Lan13g0287 546 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Lan13g0287 546 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0287 546 Pfam EF-hand domain pair 390 440 IPR002048 GO:0005509
Lan13g0287 546 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Lan13g0287 546 SUPERFAMILY EF-hand 360 512 IPR011992 -
Lan13g0287 546 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Lan13g0287 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Lan13g0287 546 CDD EFh 378 437 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0287 Lan-Chr13 1848538 1852800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0287 1 540 EF-hand Containing Proteins AT2G31500 66.052 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan13g0287 Pkinase 5.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0287 K13412 - gmx:100818929 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0196 7 1190056 1193296 Lan13g0287 13 1848538 1852800 LSH
Lan8g1763 8 24311708 24315263 Lan13g0287 13 1848538 1852800 LSH