Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0280 ATGGGACACAATTCAAAGAAGAAGAAGAAGAAAGGAGGAAGTGGAAGGAGTAGTGGAAGAACTCCCTCTAAAGGCAAAGATCATGTTTCTCCATTCACCGTCGATGATGATAATGATCTCTCCGAAGAGATAACCGCTTTATGCGCTATATTTGAAGATGATTGCAACATAGTTAGTGGATCTCAAATAGCTATTAAGCTTAGACCTTACTTTCACGATATGGGATTTTACGATTCTCATGTTTCTGCTCTTCTTCTTGTCAGGTTCTTACCTGGTTATCCTTTCAAGTGCCCTAAGCTTCATATTACTCCTGAGAATGGCTTATCTCAATCTCATGCTGATCAACTTTTGTCTCTTCTTCTTGATCAGGCTAATTTGAATGCTAGGGAGGGACGGGTCATGATTTTTAATTTGGTCGAGGCTGCTCAAGAGTTTCTATCTGGAATCCAGCCTATTGCCAAATCAACTGATTCTAAGGTTTTGCACTCAGTTAATGAAGGCAATGAAGAATTGTTACTCAAGGATATTGCATCTTCAAATAGGAATAGATCTTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAGTCATGGAATTGGGGTTTTGGAATCGATGAATCTCCTGGAAAAAGTTCTCCCCTTCCTCCCTCTAAGTTAGATGCCTCTAAACGCAGTCTTGAGGCCCGGGAAAAGAAATCTGGTAGCAAGGAAAAGCCGTCAATACTGCAAGAACTCCCTGCCAAATTAGAAACCGTTGGAGAAGTTAGTGAAGATGACAACAACAGCACATCCTTGACTAATTCAAGTAGACACCTGGTAGAGGATTTTGTAGAGAACGGCAATGAAGATTCTATCGCTGATGATTATGCAACAGAAGATAATGAAAATATGTATGCAAGCGAGTCTTCAGAGTCTTCATCATCTGCCTCCTTGACTCATCACCAAGCATCTCAAACAGTTGAAAAGGATCTAATGATGGTTCACCTGCTTCGCCTTGCTTGTGCTTCTAAAGGAACACTGGCTGAATCTTTGCCACAAATTGCAACAGAGCTTTACAATTTAGGGATCTTATCTGACCGGGCACATGACATGGCTTCTAAACCGCCTTCCATTTTCAACAAAACCTTTGATCGTCTTTTCCAGAAACGCCTGGCCTCATCAGGAGTATCTCAATTTTGGAAGCCTTCTTCCGATCTTGGCGGCTCAAATACAGTTCCAAATAGTTCTCGATACCTGAATGACTTCGAGGAAATACGGCCTCTTGGTCGTGGTGGTTTTGGCCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAGTAAAGAAAATTCGTCTCAAGGACAAAAGCATGCCTGACAGAATATTGAGGGAAGTAGCGACACTTTCTCGTTTGCAGCACCAACATGTTGTTCGGTATTATCAGGCGTGGTTTGAAACTGGAGTTGTTGATTCTTATGGTGATGCAGCTTGGGGTTCAGCAACTCCACTGAGCTCTACTTTCAGCTATAAAGCTGCCAGCACCAATGATGCCTTAGGACATGAGAATCAACTCGAATCAACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTACACCAGATGTTTGAATCGTATAATCACTTTGACAAAGAACTGGCTTGGCATTTGTTTCGCCAAATAGTGGAAGGCCTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAATATATTCTTTGATGCTCGCAATGACATTAAGATCGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATATGGGCCACCCTGTTGATACGACTGCTCTCTCCATTGATGGTACTGGGCAAGTTGGGACTTATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTCAGGGGTGGTTTTCTTTGAGCAGATTTTAGTATCTGGACTCTCAAGGTTTCATTTTCATTTTTTTAATTTTAATTCTCACCTTTAA 2043 0.4156 MGHNSKKKKKKGGSGRSSGRTPSKGKDHVSPFTVDDDNDLSEEITALCAIFEDDCNIVSGSQIAIKLRPYFHDMGFYDSHVSALLLVRFLPGYPFKCPKLHITPENGLSQSHADQLLSLLLDQANLNAREGRVMIFNLVEAAQEFLSGIQPIAKSTDSKVLHSVNEGNEELLLKDIASSNRNRSFVYGFIDLFSGYGESWNWGFGIDESPGKSSPLPPSKLDASKRSLEAREKKSGSKEKPSILQELPAKLETVGEVSEDDNNSTSLTNSSRHLVEDFVENGNEDSIADDYATEDNENMYASESSESSSSASLTHHQASQTVEKDLMMVHLLRLACASKGTLAESLPQIATELYNLGILSDRAHDMASKPPSIFNKTFDRLFQKRLASSGVSQFWKPSSDLGGSNTVPNSSRYLNDFEEIRPLGRGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVVDSYGDAAWGSATPLSSTFSYKAASTNDALGHENQLESTYLYIQMEYCPRTLHQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDMGHPVDTTALSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSSGVVFFEQILVSGLSRFHFHFFNFNSHL* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0280 680 SMART RWD2001b 42 149 IPR006575 GO:0005515
Lan13g0280 680 MobiDBLite consensus disorder prediction 258 273 - -
Lan13g0280 680 MobiDBLite consensus disorder prediction 1 15 - -
Lan13g0280 680 CDD STKc_EIF2AK4_GCN2_rpt2 410 659 - -
Lan13g0280 680 MobiDBLite consensus disorder prediction 209 273 - -
Lan13g0280 680 Gene3D Transferase(Phosphotransferase) domain 1 529 673 - -
Lan13g0280 680 ProSitePatterns Protein kinases ATP-binding region signature. 423 447 IPR017441 GO:0005524
Lan13g0280 680 SUPERFAMILY UBC-like 37 146 IPR016135 -
Lan13g0280 680 Gene3D Ubiquitin Conjugating Enzyme 32 157 IPR016135 -
Lan13g0280 680 PANTHER HISTIDYL-TRNA SYNTHETASE 37 631 - -
Lan13g0280 680 Pfam Protein kinase domain 417 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0280 680 ProSiteProfiles RWD domain profile. 42 149 IPR006575 GO:0005515
Lan13g0280 680 MobiDBLite consensus disorder prediction 298 318 - -
Lan13g0280 680 MobiDBLite consensus disorder prediction 1 36 - -
Lan13g0280 680 ProSiteProfiles Protein kinase domain profile. 417 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0280 680 SUPERFAMILY Protein kinase-like (PK-like) 405 662 IPR011009 -
Lan13g0280 680 Pfam RWD domain 40 146 IPR006575 GO:0005515
Lan13g0280 680 Gene3D Phosphorylase Kinase; domain 1 405 528 - -
Lan13g0280 680 ProSitePatterns Tyrosine protein kinases specific active-site signature. 572 584 IPR008266 GO:0004672|GO:0006468
Lan13g0280 680 PANTHER EIF-2-ALPHA KINASE GCN2 37 631 - -
Lan13g0280 680 MobiDBLite consensus disorder prediction 224 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0280 Lan-Chr13 1793228 1800131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0280 414 661 Core Cell Cycle Gene Families AT3G48750 27.843 1.85e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Lan13g0280 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0280 K16196 - gmx:100797996 968.763