Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0279 ATGGGACACAATTCAAAGAAGAAGAAGAAGAAAGGAGGAAGTGGAAGGAGTAGTGGAAGAACTCCCTCTAAAGGCAAAGATCATGTTTCTCCATTCACCGTCGATGATGATAATGATCTCTCCGAAGAGATAACCGCTTTATGCGCTATATTTGAAGATGATTGCAACATAGTTAGTGGATCTCAAATAGCTATTAAGCTTAGACCTTACTTTCACGATATGGGATTTTACGATTCTCATGTTTCTGCTCTTCTTCTTGTCAGGTTCTTACCTGGTTATCCTTTCAAGTGCCCTAAGCTTCATATTACTCCTGAGAATGGCTTATCTCAATCTCATGCTGATCAACTTTTGTCTCTTCTTCTTGATCAGGCTAATTTGAATGCTAGGGAGGGACGGGTCATGATTTTTAATTTGGTCGAGGCTGCTCAAGAGTTTCTATCTGGAATCCAGCCTATTGCCAAATCAACTGATTCTAAGGTTTTGCACTCAGTTAATGAAGGCAATGAAGAATTGTTACTCAAGGATATTGCATCTTCAAATAGGAATAGATCTTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAGTCATGGAATTGGGGTTTTGGAATCGATGAATCTCCTGGAAAAAGTTCTCCCCTTCCTCCCTCTAAGTTAGATGCCTCTAAACGCAGTCTTGAGGCCCGGGAAAAGAAATCTGGTAGCAAGGAAAAGCCGTCAATACTGCAAGAACTCCCTGCCAAATTAGAAACCGTTGGAGAAGTTAGTGAAGATGACAACAACAGCACATCCTTGACTAATTCAAGTAGACACCTGGTAGAGGATTTTGTAGAGAACGGCAATGAAGATTCTATCGCTGATGATTATGCAACAGAAGATAATGAAAATATGTATGCAAGCGAGTCTTCAGAGTCTTCATCATCTGCCTCCTTGACTCATCACCAAGCATCTCAAACAGTTGAAAAGGATCTAATGATGGTTCACCTGCTTCGCCTTGCTTGTGCTTCTAAAGGAACACTGGCTGAATCTTTGCCACAAATTGCAACAGAGCTTTACAATTTAGGGATCTTATCTGACCGGGCACATGACATGGCTTCTAAACCGCCTTCCATTTTCAACAAAACCTTTGATCGTCTTTTCCAGAAACGCCTGGCCTCATCAGGAGTATCTCAATTTTGGAAGCCTTCTTCCGATCTTGGCGGCTCAAATACAGTTCCAAATAGTTCTCGATACCTGAATGACTTCGAGGAAATACGGCCTCTTGGTCGTGGTGGTTTTGGCCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAGTAAAGAAAATTCGTCTCAAGGACAAAAGCATGCCTGACAGAATATTGAGGGAAGTAGCGACACTTTCTCGTTTGCAGCACCAACATGTTGTTCGGTATTATCAGGCGTGGTTTGAAACTGGAGTTGTTGATTCTTATGGTGATGCAGCTTGGGGTTCAGCAACTCCACTGAGCTCTACTTTCAGCTATAAAGCTGCCAGCACCAATGATGCCTTAGGACATGAGAATCAACTCGAATCAACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTACACCAGATGTTTGAATCGTATAATCACTTTGACAAAGAACTGGCTTGGCATTTGTTTCGCCAAATAGTGGAAGGCCTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAATATATTCTTTGATGCTCGCAATGACATTAAGATCGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATATGGGCCACCCTGTTGATACGACTGCTCTCTCCATTGATGGTACTGGGCAAGTTGGGACTTATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTCAGGGGTGGTTTTCTTTGAGCTTTGGCACCCATTTCAGACAGCAATGGAGCGACATGTTGTTTTATCTGATCTAAAGCAGAAAGGAGAATTGCCTCCTGCGTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTGCTGCGAAAGTTAATGTCTTCAGGTCCTTCTGACCGTCCTTCTGCCACAGAACTTCTACATAATGCATTTCCTCCACGGATGGAGTCTGAATTATTAGATGATATCCTACGCACAATGCAGAAATCAGAGGATAGAAGCATATATGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACTAAGCACACTCGTCAGGCTGGTGGATTGGGGTCAGTGGGAGATAACAGTTCATCCATTCATTGCACAGAATTTGAAACTGAGGTTAGAGATTATGTCGTAGATGTCAACAAGGAAATTTTCAGACAGCATTGTGCAAAGCGACTAGAAATATTAACAGTGCACTTACTGGACGATTCCCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGGGGAGATATGCTTGAACTTTGCCACGAGCTGCGCTTGCCTTTTGTGAATTGGATTATATCTAATCAGAAATCTACATTCAAACGATATGAGATATCGTGTGTCTACAGAAGAGCAGTTGGACATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCTTTGACAGAGGCAGAAGTCATAAAGGTGACAAGGGACATAGTCACTTGCTTTTTCCATGCAGATTCATGTGACATTCATCTAAACCATGGTGCCCTACTGGATGCAATTTGGTCATGGATTGGAGTCAAAGTAGAACATAGACTTAAAGTAGCGGAGCTTCTTTCAATGATGAGCTCTTTGCGTCCACAATCCTCTGAAAGAAAATCGAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTATGGTAAATAGGTTGCAGACAGTAGGTCTAAGATTCTGTGGAGCTGCAGATCTGGCACTTCCCAGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATGCAAGGCACTTGATGAATTATCGGAGCTCTTAAGTTTTTTGAGAATTTGGAGAATCGACAAAAATGTCTATGTAGATGCATTAATGCCACCAACTGAAAGTTATCATCGAGATTTATTTTTTCAGGTATACCTAAGGAAGGAGAACAATCCTGGATCACTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGGTATGACTATTTGCTTAATCAGTTGTGGAGTCGTGACCATAAAGGAAATCCTCCCAGTGGTGTGGGGACTAGCCTTGCACTAGAGACAGTAATTCAGAATTGTCCTGTAGATTTTAAGCCCATCAGAAATGAAGCCAGCACCAACATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGCTGGTACAGCGCATGGAACTAGTCGCTGATTTATGGGATGAGAACTTTAAGGCTGATTTTGTTCCCACCCGTGATCCAAGTCTTACAGAGCAGTATGAGTATGCCTATGAACATGATATCAAATTTCTTGTCATCATTACCGATGCAGGTGTCTCACAAACAGGTTCTGTTAAGGTTCGACACCTTGAGCTAAAGAAGGAGAAGAATGTTGAGAGAGAAAACTTAATCAAGTTTCTGTTGGATGCTATGGCAACACAATTTAGAAACCCCTCCATTTGGGTTTGA 3696 0.421 MGHNSKKKKKKGGSGRSSGRTPSKGKDHVSPFTVDDDNDLSEEITALCAIFEDDCNIVSGSQIAIKLRPYFHDMGFYDSHVSALLLVRFLPGYPFKCPKLHITPENGLSQSHADQLLSLLLDQANLNAREGRVMIFNLVEAAQEFLSGIQPIAKSTDSKVLHSVNEGNEELLLKDIASSNRNRSFVYGFIDLFSGYGESWNWGFGIDESPGKSSPLPPSKLDASKRSLEAREKKSGSKEKPSILQELPAKLETVGEVSEDDNNSTSLTNSSRHLVEDFVENGNEDSIADDYATEDNENMYASESSESSSSASLTHHQASQTVEKDLMMVHLLRLACASKGTLAESLPQIATELYNLGILSDRAHDMASKPPSIFNKTFDRLFQKRLASSGVSQFWKPSSDLGGSNTVPNSSRYLNDFEEIRPLGRGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVVDSYGDAAWGSATPLSSTFSYKAASTNDALGHENQLESTYLYIQMEYCPRTLHQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDMGHPVDTTALSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSSGVVFFELWHPFQTAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRKLMSSGPSDRPSATELLHNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHTRQAGGLGSVGDNSSSIHCTEFETEVRDYVVDVNKEIFRQHCAKRLEILTVHLLDDSPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSTFKRYEISCVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGALLDAIWSWIGVKVEHRLKVAELLSMMSSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGAADLALPRLRGALPSDKRTCKALDELSELLSFLRIWRIDKNVYVDALMPPTESYHRDLFFQVYLRKENNPGSLSEGALLAVGGRYDYLLNQLWSRDHKGNPPSGVGTSLALETVIQNCPVDFKPIRNEASTNILVCSRGGGGLLVQRMELVADLWDENFKADFVPTRDPSLTEQYEYAYEHDIKFLVIITDAGVSQTGSVKVRHLELKKEKNVERENLIKFLLDAMATQFRNPSIWV* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0279 1231 SMART RWD2001b 42 149 IPR006575 GO:0005515
Lan13g0279 1231 Pfam Protein kinase domain 417 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0279 1231 SUPERFAMILY Class II aaRS and biotin synthetases 785 1109 IPR045864 -
Lan13g0279 1231 Pfam Histidyl-tRNA synthetase 865 1108 IPR041715 -
Lan13g0279 1231 PANTHER EIF-2-ALPHA KINASE GCN2 38 1230 - -
Lan13g0279 1231 SUPERFAMILY Class II aaRS ABD-related 1127 1221 - -
Lan13g0279 1231 MobiDBLite consensus disorder prediction 258 273 - -
Lan13g0279 1231 Pfam RWD domain 40 146 IPR006575 GO:0005515
Lan13g0279 1231 ProSiteProfiles Protein kinase domain profile. 417 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan13g0279 1231 MobiDBLite consensus disorder prediction 1 15 - -
Lan13g0279 1231 MobiDBLite consensus disorder prediction 209 273 - -
Lan13g0279 1231 ProSitePatterns Protein kinases ATP-binding region signature. 423 447 IPR017441 GO:0005524
Lan13g0279 1231 CDD STKc_EIF2AK4_GCN2_rpt2 410 717 - -
Lan13g0279 1231 SUPERFAMILY Protein kinase-like (PK-like) 413 726 IPR011009 -
Lan13g0279 1231 SUPERFAMILY UBC-like 37 146 IPR016135 -
Lan13g0279 1231 ProSiteProfiles RWD domain profile. 42 149 IPR006575 GO:0005515
Lan13g0279 1231 MobiDBLite consensus disorder prediction 298 318 - -
Lan13g0279 1231 Coils Coil 968 988 - -
Lan13g0279 1231 MobiDBLite consensus disorder prediction 1 36 - -
Lan13g0279 1231 PANTHER HISTIDYL-TRNA SYNTHETASE 38 1230 - -
Lan13g0279 1231 Gene3D Phosphorylase Kinase; domain 1 405 533 - -
Lan13g0279 1231 ProSitePatterns Tyrosine protein kinases specific active-site signature. 572 584 IPR008266 GO:0004672|GO:0006468
Lan13g0279 1231 Pfam Anticodon binding domain of tRNAs 1126 1223 IPR024435 -
Lan13g0279 1231 Gene3D - 1122 1221 IPR036621 -
Lan13g0279 1231 Gene3D Transferase(Phosphotransferase) domain 1 536 727 - -
Lan13g0279 1231 MobiDBLite consensus disorder prediction 224 240 - -
Lan13g0279 1231 Gene3D Bira Bifunctional Protein; Domain 2 780 1114 IPR045864 -
Lan13g0279 1231 Gene3D Ubiquitin Conjugating Enzyme 32 156 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0279 Lan-Chr13 1777756 1792326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0279 417 720 MAP Kinase Kinase Kinase AT1G63700 26.115 2.47e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Lan13g0279 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0279 K16196 - gmx:100797996 1959.88