Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0276 ATGGATAAGGACAAATCCCCTGGTCATGGTGGAGGTTTCCCACCTCCCTCAGCCCGTTTTTCCGGTTACTCGCCGGCTGCAGCCCCGTTTAATGTGAGATCAGAGCCATCCTCATCATATCCTCCATTGGTTGACTCTGCTAGTGCTAGCTTTATTCATGATATTAGCAGAATGCCTGATAATCCCCCGAGAAATCGAGGCCATCGACGCGCTCATTCAGAGATTATCACCCTACCTGATGATCTTAGCTTTGACAGTGACCTTGGTGTAGTTGGAGGCGCTGATGGGCCATCGTTCTCTGATGAGACAGAGGAAGACTTACTGTCCATGTACCTTGATATGGACAAATTCATTTCGTCATCCGCTACATCGCCTTTCCAAGTTGGTGAGTCATCAACTGCTGCTGCAGCACCAACTTCAAGAGCCCCTGCCTCTTCCGCTGATGACATCGTTGTTGGTACTAACCAAAGGCCCAGAGTTAGGCACCAACATAGCCAGTCCATGGATGGGTCAACAACCATCAAACCTGAGATGCTAGTCTCAGGTTCGGAAGACATCTCTGGAGTTGATGCCAAAAAATCATTGTCAGCTGCCAAGCTTGCCGAACTCGCTTTGGTTGATCCTAAGCGTGCTAAAAGGATATGGGCAAATAGGCAATCTGCCGCGAGATCAAAAGAAAGGAAGATGCGCTACATTTCTGAGCTTGAAAGGAAGGTGCACACATTGCAAACAGAAGCTACATCCTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAACTGGAGTATCTAGTGAGAACGGTGAGTTGAAATTGAGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTGAATGATGCATTAAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGGCAAGGTATACCCAATGGAGGACCTATGAACTTTGCCTCATATGGAGGGGGGCAACAATTCTATCCCAACAACAATCAGGGCATGCACACTCTTTTAGCTGCACAACAGCTTCAACAACTTCAAATTCATTCCCAGAAAAAGCAGCAGCAGCAACAACAGATCCTACAGCATCAATTTCAGCAGCAACATCAGTTTCAACAGCATCAACTACAGCAGCAACAACCACCACAACATCCACAGCAGCAGCAGCCACCACAACATCCACAGCAGCAGCAGCCACAACATCCGCAGCAGCAGCCACAACATCAGCAGCAGCCACAACAGGAACAGTAG 1242 0.4742 MDKDKSPGHGGGFPPPSARFSGYSPAAAPFNVRSEPSSSYPPLVDSASASFIHDISRMPDNPPRNRGHRRAHSEIITLPDDLSFDSDLGVVGGADGPSFSDETEEDLLSMYLDMDKFISSSATSPFQVGESSTAAAAPTSRAPASSADDIVVGTNQRPRVRHQHSQSMDGSTTIKPEMLVSGSEDISGVDAKKSLSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYISELERKVHTLQTEATSLSAQLTLLQRDTTGVSSENGELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQGIPNGGPMNFASYGGGQQFYPNNNQGMHTLLAAQQLQQLQIHSQKKQQQQQQILQHQFQQQHQFQQHQLQQQQPPQHPQQQQPPQHPQQQQPQHPQQQPQHQQQPQQEQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0276 413 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 207 270 IPR004827 GO:0003700|GO:0006355
Lan13g0276 413 Coils Coil 274 294 - -
Lan13g0276 413 MobiDBLite consensus disorder prediction 356 413 - -
Lan13g0276 413 Coils Coil 225 252 - -
Lan13g0276 413 MobiDBLite consensus disorder prediction 1 42 - -
Lan13g0276 413 SUPERFAMILY Leucine zipper domain 209 260 IPR046347 GO:0003700|GO:0006355
Lan13g0276 413 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 382 - -
Lan13g0276 413 MobiDBLite consensus disorder prediction 129 149 - -
Lan13g0276 413 Pfam bZIP transcription factor 209 258 IPR004827 GO:0003700|GO:0006355
Lan13g0276 413 SMART brlzneu 205 269 IPR004827 GO:0003700|GO:0006355
Lan13g0276 413 MobiDBLite consensus disorder prediction 356 380 - -
Lan13g0276 413 MobiDBLite consensus disorder prediction 59 73 - -
Lan13g0276 413 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 382 - -
Lan13g0276 413 MobiDBLite consensus disorder prediction 387 413 - -
Lan13g0276 413 Coils Coil 336 356 - -
Lan13g0276 413 CDD bZIP_plant_RF2 210 259 IPR044759 GO:0003700|GO:0006355
Lan13g0276 413 MobiDBLite consensus disorder prediction 54 73 - -
Lan13g0276 413 Gene3D - 208 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0276 Lan-Chr13 1760312 1764738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0276 19 337 bZIP Transcription Factor Family AT1G06070 72.171 2.50e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan13g0276 bZIP_1 7.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0276 - - ccaj:109806600 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1768 8 24338510 24343178 Lan13g0276 13 1760312 1764738 LSH
Lan6g2166 6 32088984 32096573 Lan13g0276 13 1760312 1764738 PCT
Lan10g0312 10 2057823 2061248 Lan13g0276 13 1760312 1764738 PCT
Lan3g0249 3 1616618 1620690 Lan13g0276 13 1760312 1764738 PCT
Lan13g0276 13 1760312 1764738 Lan6g2166 6 32088984 32096573 PCT
Lan13g0276 13 1760312 1764738 Lan10g0312 10 2057823 2061248 PCT
Lan13g0276 13 1760312 1764738 Lan3g0249 3 1616618 1620690 PCT