Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0274 ATGCCGTTTCCGATTAAATCAATGAGGCCTGCATATGGCGGTGGCGGCAAGGATTTCGACGAAGTTCCTCCTTCGAACAACCTATGGGTTGGGAATCTAGCGCCGAATGTAACCGACTCCGATCTGATGAATCTGTTCGCACAATACGGCGCTTTAGATAGCGTCACATCGTATTCGTCTCGGAGTTACGCTTTTGTTTTCTTCAAGCGCGTTGAAGATGCTAAATCCGCTAAGAACAATCTACAAGGATTCGCTCTCCGTGGCAATTACTTGAAGATTGAGTTTGCGAGACCGGCGAAGCCATGTAAGCAGCTTTGGGTGGGTGGTATTAGCACGGCTGTCACAAAGGAAGAATTGGAAGCTGAATTTTGTAAATTTGGTAAAATTGAGGAGTTTAAGTTCTTCAGAGACCGAAATACTGCTTGTGTTGAATTTTTCAATTTGGATGATGCTACTCAAGCTATGAAAATAATGAATGGAAAACGTATGGGTGGAGACCATTTACGTGTAGACTTTCTTCGGTCTAACACTTCGAAAAAAGATCAGATGCTTGATTATGGGCAGTTTCAGGGAAAAAGCTTTGGCCCTACTGATTCCTATACTGGACAGAAAAGACCACTGAATTCACAACTTCCAATGGGGAGGAAGGGCGATAGTCAACCTAGCAATGTTTTGTGGATAGGTTATCCTCCTGATGTTCAGATTGATGAGCAAATGCTCCACAACGCCATGATTTTATTTGGCGAGATTGAGAGAATCAAGAGTTTTCCTTCGAGGAATTCTTCGTTTGTTGAATTTAGAAGTGTGGATGAAGCTAGACGTGCAAAAGAAGGCCTTCAAGGACGCCTTTTTAATGACCCTCGAATAACAATCTTGTATTCAAGCAATGATCAGGTACCTGGCAAAGATTATCCTGGCTATTATCCCGGAAATGATGGGCTAAGACCTGATGTATTCTTGAATGAGCATGCATTTCGTCCACTACAAATGGATGTATTTGGTCATACTCCTATGGTTCCTAATAATTTCCCTGGACAGTTCCCACCTAGTGGTATTGGGTCAACTGCACCAATGCGGCCTTTTGTTCCTCAAGGCAGTCTTGAATCTCGAATTTCTGGCCCCTGCTTTAATGAGGGGAGCTCACTCCACAAATTTCAAGATGGTAGCTCCAAGAGTAAGATGGGTCCAAACTGGAAAAGACCATCCCCTCCTGCATCGGGGTTACTTCCATCTCCTGCATCAGGTACTAGGCTTCCTGCAAGATCTGCCTCTGGTGCATGGGATGTACTCGACATTAACCATATCTCCAGAGATGCTAAACGTTCAAGGATAGATGGTCGTGGGTCAGTTATGGAACAAACATATGGCATGGATCCAATTCATCTTGGTCCAGTGAGCTCAAGGATTGCTGCTGGAGTACATGGGCCTGCCGAACCTGATAGTGATCATATTTGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGCCATGCTAGATGTGTCCCTATCGGGAAAGGGATAGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCGAGGACAGGGTTGGATATACTCACAAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTGCCCGATAGTGAAGAAGATTTTGCTTCTTACACTGAATTTCTTCGCTACCTTAGTGCAAAAGATCGTGCTGGTGTTGCTAAGTTTGCTGATAACACCACCTTATTCTTGGTACCTCCTTCTGATTTTCTGACAAAAGTTTTGAAAGTTCCGGGACCTGAACGTCTATATGGTGTGGTTCTGAAGTTTCCTCAAGTTCCAATTAGCGCACCAATGCAACAATCATCACATTTACCTCCTTCACAGTCCACTCAGTATGTGCAGCAGATTCCTCCTTCACAAGCGGAGTATGGTTTTATTCCTGCAAAGGAGGAACAGGTTTTGCCAATGGATTATAACAGACTATTGCTTGAGGATCCTAAGCTTCCTCCTAAACCAGTATATCCAGTTACAAGTGGCCCTCCTTCAGTTCAGCCTATGCGTACAGATTTTGCTCCCAGCAGTAATGCTTCTCTGTCCCAAGCTGGTGTTGCATTAACACCCGAGCTTATTGCAACGTTAACCAATTTTCTCCCTGCAACTACACAAATATCTGCCACTGACGGTACCAGCTCATCAGGAGGCTCCTTGACTGTGAAACCGCCATTTCCCCCTGTTGCACACAATGATGGAAACCAATCTCAATTATGGAAACCAGAGCATCCAATTGTTGATCAATCTATTCACCCTCCTCAACCATTGGGGAATATGTATAACATTCACAATGCTCACTACCAGCCTTATCCAGTGGCGCCTACCTCTGTCCACCCTGGTCAAGTGGTCTCAAGCAGTTCTCACATCCAAGAGACTGCTTCCAGCTTACAGCAGCAAGGTGCTGTGTCATCTAGACCCATGACTAATTTCATGATGCCTTCTCAAAGTGGACAGTTAGCTGTATCCCCTCATGTCAATCATCAGTACCAAGTTCAACACTCCCCTGGCACTCAGAAAGGCTTTGTCGGAATGCAAGGAACAGATACCTCTGTTTTATACAATTCTCAGGCTTTCCTGGACGCCAATAATTCTTTTACCTCATCTAGTCATGTTCAAAGTGCTAATCCTTCACGACAGCAAGCTGTCATGCCATATACAGTGGAGCAAGTAAACTCAGACCTTTCCAATCAGCAGGTTCCTCTATTTGGAGCCGGTCAGGGCACATCAGAAGTGGAGGCCGATAAGAATCAGAGATACCAGTCGACATTACAGTTTGCAGCCAATCTTCTCCACCAAATACAGCAGCAGCAACAACAGCAACAACCAACCCAAGGAGGATCTGGGCCGGGAATTCAACAATGA 2901 0.4481 MPFPIKSMRPAYGGGGKDFDEVPPSNNLWVGNLAPNVTDSDLMNLFAQYGALDSVTSYSSRSYAFVFFKRVEDAKSAKNNLQGFALRGNYLKIEFARPAKPCKQLWVGGISTAVTKEELEAEFCKFGKIEEFKFFRDRNTACVEFFNLDDATQAMKIMNGKRMGGDHLRVDFLRSNTSKKDQMLDYGQFQGKSFGPTDSYTGQKRPLNSQLPMGRKGDSQPSNVLWIGYPPDVQIDEQMLHNAMILFGEIERIKSFPSRNSSFVEFRSVDEARRAKEGLQGRLFNDPRITILYSSNDQVPGKDYPGYYPGNDGLRPDVFLNEHAFRPLQMDVFGHTPMVPNNFPGQFPPSGIGSTAPMRPFVPQGSLESRISGPCFNEGSSLHKFQDGSSKSKMGPNWKRPSPPASGLLPSPASGTRLPARSASGAWDVLDINHISRDAKRSRIDGRGSVMEQTYGMDPIHLGPVSSRIAAGVHGPAEPDSDHIWRGIIAKGGTPVCHARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLSAKDRAGVAKFADNTTLFLVPPSDFLTKVLKVPGPERLYGVVLKFPQVPISAPMQQSSHLPPSQSTQYVQQIPPSQAEYGFIPAKEEQVLPMDYNRLLLEDPKLPPKPVYPVTSGPPSVQPMRTDFAPSSNASLSQAGVALTPELIATLTNFLPATTQISATDGTSSSGGSLTVKPPFPPVAHNDGNQSQLWKPEHPIVDQSIHPPQPLGNMYNIHNAHYQPYPVAPTSVHPGQVVSSSSHIQETASSLQQQGAVSSRPMTNFMMPSQSGQLAVSPHVNHQYQVQHSPGTQKGFVGMQGTDTSVLYNSQAFLDANNSFTSSSHVQSANPSRQQAVMPYTVEQVNSDLSNQQVPLFGAGQGTSEVEADKNQRYQSTLQFAANLLHQIQQQQQQQQPTQGGSGPGIQQ* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0274 966 MobiDBLite consensus disorder prediction 190 219 - -
Lan13g0274 966 MobiDBLite consensus disorder prediction 945 966 - -
Lan13g0274 966 SMART rrm1_1 27 94 IPR000504 GO:0003723
Lan13g0274 966 SMART rrm1_1 104 171 IPR000504 GO:0003723
Lan13g0274 966 SMART rrm1_1 224 292 IPR000504 GO:0003723
Lan13g0274 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Lan13g0274 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Lan13g0274 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Lan13g0274 966 MobiDBLite consensus disorder prediction 192 217 - -
Lan13g0274 966 Pfam SPOC domain 479 596 IPR012921 -
Lan13g0274 966 MobiDBLite consensus disorder prediction 380 420 - -
Lan13g0274 966 CDD RRM3_Spen 225 287 - -
Lan13g0274 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 960 - -
Lan13g0274 966 MobiDBLite consensus disorder prediction 382 396 - -
Lan13g0274 966 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 20 960 - -
Lan13g0274 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Lan13g0274 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Lan13g0274 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Lan13g0274 966 CDD RRM3_Spen 105 174 - -
Lan13g0274 966 Gene3D - 17 99 IPR012677 -
Lan13g0274 966 Gene3D - 100 183 IPR012677 -
Lan13g0274 966 SUPERFAMILY RNA-binding domain, RBD 102 297 IPR035979 GO:0003676
Lan13g0274 966 CDD RRM3_Spen 28 97 - -
Lan13g0274 966 Coils Coil 929 949 - -
Lan13g0274 966 MobiDBLite consensus disorder prediction 665 690 - -
Lan13g0274 966 Gene3D - 213 303 IPR012677 -
Lan13g0274 966 MobiDBLite consensus disorder prediction 720 752 - -
Lan13g0274 966 SUPERFAMILY RNA-binding domain, RBD 18 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0274 Lan-Chr13 1737096 1747839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0274 27 286 Eukaryotic Initiation Factors Gene Family AT2G23350 24.188 1.91e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0274 - - gmx:100777570 1415.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2165 6 32076897 32086809 Lan13g0274 13 1737096 1747839 PCT
Lan13g0274 13 1737096 1747839 Lan6g2165 6 32076897 32086809 PCT