Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0269 ATGCCATACCCTTCTTTCTTCAAGCTTCTTCTACCCTCTACTGTTCAAGCCAAGCAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGAGGGTGAGCTTTCGACAACTGCTACCCTCTCTGTTCCCGATGGTAGTGTCTGGCGTGTAGGATTAAAAAAGGCTGACAACAAACTTTGGTTTGTTGATGGTTGGCCAGAATTTGTTCAACGCTATTCCATTTCTGTTGGATACTTGTTAGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCTACTTCTGAGATAAACTATCAGTCAGCCACGCGAAGCAGTAATGAAGGGCCTTACTTTGCAAACCGTCTTAAATTTTTTGAAGAAATGGAAGATGAAGACTCTGTTGAATACTTGGATTCACCTTCTCGCCCGACTCCCGGTGCTTTGCAAAACAAAGTTCTTCCTGGATCAGTAGATATCAAACCCGGAAAGAGTAATACTCCTCCAGCAGTGCAGAATCTATTTAATGGGTCTAAACTTAATAGCGTAAACTGGGGAGAGGGCGGGGGTGTTCTTTCTTCGAGAGGTTCTGATACACTCGACAGTCAGTTGACCAGAGATATAGGTGTTCAGTTTAATGCAGTCGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTGCTTCTATTGAGGAAAAGGTTAAAAAAACTGAGAGAAAGAAGCGGAAATCAGCTCATGAAGGCCAGGAATCATATGCTGAACATGGAGAGGAGACAGAAATACGCAATAGATTTTACGAAAGTGCTTCGGCAAGGAAAAGAACTGTAACAGCTGAAGAAAGAGAAAGGGCGATTAATGCAGCAAAAACATTTGAACCAGATAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCATGCTTTGCGGAAAAGCATCTGAATGGAGTTTCCGGATTTATTAAACTTCAAAACTCAGATGGAAGACAGTGGCCTGTTCGGTGCCTTTATAAAGGAGGTAGAGCTAAGTTTAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATATAGGGGAAGGTGATGTATGTGTGTTTGAGCTGCTTAGAATGAAGGA 1139 0.4126 MPYPSFFKLLLPSTVQAKQLRIPDNFLRKYEGELSTTATLSVPDGSVWRVGLKKADNKLWFVDGWPEFVQRYSISVGYLLVFRYEGKSSFNVHIFNLATSEINYQSATRSSNEGPYFANRLKFFEEMEDEDSVEYLDSPSRPTPGALQNKVLPGSVDIKPGKSNTPPAVQNLFNGSKLNSVNWGEGGGVLSSRGSDTLDSQLTRDIGVQFNAVEFKRSTEELKLRASIEEKVKKTERKKRKSAHEGQESYAEHGEETEIRNRFYESASARKRTVTAEERERAINAAKTFEPDNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQNSDGRQWPVRCLYKGGRAKFSQGWFEFALENNIGEGDVCVFELLRMK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0269 379 MobiDBLite consensus disorder prediction 232 255 - -
Lan13g0269 379 Gene3D - 2 98 IPR015300 -
Lan13g0269 379 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 379 - -
Lan13g0269 379 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Lan13g0269 379 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lan13g0269 379 CDD B3_DNA 294 377 IPR003340 GO:0003677
Lan13g0269 379 SUPERFAMILY DNA-binding pseudobarrel domain 289 376 IPR015300 -
Lan13g0269 379 ProSiteProfiles B3 DNA-binding domain profile. 296 379 IPR003340 GO:0003677
Lan13g0269 379 Pfam B3 DNA binding domain 299 376 IPR003340 GO:0003677
Lan13g0269 379 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Lan13g0269 379 Gene3D - 273 379 IPR015300 -
Lan13g0269 379 SMART B3_2 296 379 IPR003340 GO:0003677
Lan13g0269 379 SMART B3_2 6 98 IPR003340 GO:0003677
Lan13g0269 379 PANTHER B3 DOMAIN-CONTAINING 1 379 - -
Lan13g0269 379 Coils Coil 225 245 - -
Lan13g0269 379 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0269 Lan-Chr13 1701308 1704385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0269 1 379 B3 DNA Binding Superfamily AT3G18990 53.034 3.27e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan13g0269 B3 2.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0269 - - gmx:100813285 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0269 13 1701308 1704385 Lan13g0269 13 1701308 1704385 ECH
Lan8g1777 8 24393482 24396757 Lan13g0269 13 1701308 1704385 LSH