Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0268 ATGGATAATCAAGTGGACAAATATTCCTTCATCACAGTCATCAAGATAGGCATCAACACCCACCAAATGATGATCCCACCTGATTTTGTGAAGTATTGTGATGAAGACTTCTCCTCCACCAATGTGATTCTTATAGGTCCTTCTGGTGACCCATGCCGAGTCACTATTTTGGAGAAAGATGAAATTTTTATGCAAGATGGTTGGCCAAGATTTCTGAGAAACAACTTAGTAGAGGAAAATGAGTTGCTGCTTTTCACATATGAGGGAGATAACTGCTTCCGGGTGCAAATATTTGGTCTTAATGCATGTGAGAGACTAAACACTAAAATAGCACCACAGAGTAGTGCAGCCAAGGTGTGTTCATCATTCTTCACAGTCTTCATTTCAAAGTTTTGCTCTGAAAGAATGCCTATTCCAAGTGATTTTCTGAAACTGGCAAGACTTGAGGAAAGAGAACCTAAGGAATTCATCCTTAGAAATTACAGTGAGGTGGGTTGGAATGTGAGAGCATGCAGTGTTGGCAGCAACATATGTTTTGTTGATGGTTGGAAACAATTTGTGGCAGACAATTGTTTAGAGGGAGAGGACTTCATTTTTTTCAAATATGATGGTAAATATAAAATGAAGTTCAAGATCTTAAAATTTTATGACTTGGAACAAATAGAGGTAAATCAGGAGGACTCTGTTTTGGAGAACCAGGATGATGAGTTTGGAGGAAATTATCACAGAACTGGCAAGAGGAAAACTGCAAGAAGTTCTGCAAGCAAGAACTTTGGAAATGCAAAGTATGTTCATTATGACAATCCACACTTCACTGCAATACTGCAAAAAGGCCGAGAAAATGAATTACGTGTTCCAAAAAAATTGATTGTTGACTTCTCCCTCAACTTGCCACAAAATATTACCCTTCTATGTTGTGAGCATGATGGAAGAAATGATGTGCCATATCTTCAAACCTTGCCAGAAGAGACACACGTCCGCAAAAGCCGTAGGACAGTCACAGGAGAACTGCAGAAGTGGAAAGATGGCCGCATATTTTACAAAGGTTGGGCAAGATTCTGCAGAGTGAACAAGATTGACATGAAAAAAGATGAATGCATTTGTGAATTTGTGATGGGGGAAGACGAACAAATACAAATGTTACAAGTGCATGTTGTTAAGAATGGACTACTAATGTCAGCAACATAA 1188 0.3889 MDNQVDKYSFITVIKIGINTHQMMIPPDFVKYCDEDFSSTNVILIGPSGDPCRVTILEKDEIFMQDGWPRFLRNNLVEENELLLFTYEGDNCFRVQIFGLNACERLNTKIAPQSSAAKVCSSFFTVFISKFCSERMPIPSDFLKLARLEEREPKEFILRNYSEVGWNVRACSVGSNICFVDGWKQFVADNCLEGEDFIFFKYDGKYKMKFKILKFYDLEQIEVNQEDSVLENQDDEFGGNYHRTGKRKTARSSASKNFGNAKYVHYDNPHFTAILQKGRENELRVPKKLIVDFSLNLPQNITLLCCEHDGRNDVPYLQTLPEETHVRKSRRTVTGELQKWKDGRIFYKGWARFCRVNKIDMKKDECICEFVMGEDEQIQMLQVHVVKNGLLMSAT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0268 395 SUPERFAMILY DNA-binding pseudobarrel domain 122 214 IPR015300 -
Lan13g0268 395 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Lan13g0268 395 CDD B3_DNA 122 215 IPR003340 GO:0003677
Lan13g0268 395 Gene3D - 249 388 IPR015300 -
Lan13g0268 395 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Lan13g0268 395 SUPERFAMILY DNA-binding pseudobarrel domain 265 373 IPR015300 -
Lan13g0268 395 SMART B3_2 10 101 IPR003340 GO:0003677
Lan13g0268 395 SMART B3_2 123 216 IPR003340 GO:0003677
Lan13g0268 395 CDD B3_DNA 9 98 IPR003340 GO:0003677
Lan13g0268 395 PANTHER B3 DOMAIN-CONTAINING 120 386 - -
Lan13g0268 395 PANTHER B3 DOMAIN-CONTAINING 10 106 - -
Lan13g0268 395 Gene3D - 2 103 IPR015300 -
Lan13g0268 395 Gene3D - 115 215 IPR015300 -
Lan13g0268 395 Pfam B3 DNA binding domain 19 98 IPR003340 GO:0003677
Lan13g0268 395 Pfam B3 DNA binding domain 123 212 IPR003340 GO:0003677
Lan13g0268 395 ProSiteProfiles B3 DNA-binding domain profile. 121 216 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0268 123 387 REM Transcription Factor Family AT3G53310 23.000 1.36e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan13g0268 B3 3.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0268 - - lang:109325151 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0268 13 1696837 1699349 Lan13g0268 13 1696837 1699349 ECH