Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0262 ATGATCAATCACCACCCTTCTCCGCCACCCCTCCACCACCATCATTGGGCCCCATCACCAACTCCAACTCCAACTCCCTTCATTAACAACTTATCACCACCGTCAAAGTTACCGGTTGACTTTAGTCCTCCTCTTATTGCAATGGTTGTGATTATAGTAACCGCTTTTTTATTCATAACGTATTCTCGTTTAATCGCCCGTCACCTCCGTCCTCCAATTCACAACCTCATCAACCGCTACCGCCGCCGTCGCTCCCGCTCTTTCCTCCCTTCCTCCTCCGGCGACCTAGACTCACTCCCTTTTGATTCTCCCTTCGATAGTGGACCCCACCCTTTCTCCCCTTACGGCCTCGACGACTCTATAATCAAAACCATTCCCTTCTCTCTCTATACTTTCACAGTAAACGCCAACGAGTCACGCCGTGATTGCGCCGTTTGCTTATTCGAATTTCAAGATGACGATTACGTTCGTACTCTACCAATTTGTTCTCACACTTTCCACGTGGATTGCATCGATGCGTGGCTTCGTTCTCATGCTAATTGTCCTCTCTGCCGTGCCGGTGTTCTATGCACAGATTCGCCGCCGTTCTTCACGCCGATGATGGCGGCAAGGATTCGTCCCAGTCTTGATGACGAAACTATATTGCATAGAATTAGCGTGGATCGTCTTATGGAATCACGTTCTCCGGTGCCGATGTTTAACTCCACCGTCCCGGAGATTACACCGTGTGAGGAAGATTCACAGAGAATCAATTCGGAGGATAGGTTTGGCCGTGGGGATTTTATGTTGAAGCGATCGTATTCGTTTGGATTCGAACGGAGCCTTCCATCAGATAGGATGATGATGGAGCCGGCCACGGCATCACCGTGGCGATACCGGAGAGGAAGCACAAGTTTCTGGAGCAAGAGGCCATCGCCGTTTGGTTCATTAGGTAAGCCAATGGTGTTCTCGTTCAGGTATTACAGAGGAATGAAATCGCCGTTTTTCCGGCGAAGAGGCTTCTTCCCGTTGTCGGAATCCAGCGTAAGGTACGCCGGCGGAGGTAGCTCATCGAGAAGGAGCAAATCAATAGCTAGCCCTATGTTTCTGAGATCATCAGGTTTAACGGCGGGGGTGTCAGCATTCTCGTCAAGCAGGCTCCGGTGCGGTGACCCGGAGGCGCTACTCTCACCGGAGAGATTTAACAGAAGATGA 1194 0.5067 MINHHPSPPPLHHHHWAPSPTPTPTPFINNLSPPSKLPVDFSPPLIAMVVIIVTAFLFITYSRLIARHLRPPIHNLINRYRRRRSRSFLPSSSGDLDSLPFDSPFDSGPHPFSPYGLDDSIIKTIPFSLYTFTVNANESRRDCAVCLFEFQDDDYVRTLPICSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPPFFTPMMAARIRPSLDDETILHRISVDRLMESRSPVPMFNSTVPEITPCEEDSQRINSEDRFGRGDFMLKRSYSFGFERSLPSDRMMMEPATASPWRYRRGSTSFWSKRPSPFGSLGKPMVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGGGSSSRRSKSIASPMFLRSSGLTAGVSAFSSSRLRCGDPEALLSPERFNRR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0262 397 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 368 - -
Lan13g0262 397 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Lan13g0262 397 CDD RING-H2_PA-TM-RING 142 185 - -
Lan13g0262 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 189 IPR013083 -
Lan13g0262 397 Pfam Ring finger domain 142 185 IPR001841 -
Lan13g0262 397 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 368 IPR044675 -
Lan13g0262 397 SUPERFAMILY RING/U-box 139 191 - -
Lan13g0262 397 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0262 Lan-Chr13 1650906 1652752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0262 31 397 C3H Transcription Factor Family AT3G18930 51.134 5.02e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0262 - K19041 gmx:100806115 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0262 13 1650906 1652752 Lan13g0262 13 1650906 1652752 ECH